This document presents the R scripts and analyses to generate the figures and tables in the article, “Omics-inferred partitioning and expression of diverse biogeochemical functions in a low-O2 cyanobacterial mat community”.
Sequences from this study are available from NCBI under BioProject no. PRJNA72255. Reads from all 15 metagenomes and 6 metatranscriptomes are available in NCBI’s Sequence Read Archive (Table S1). Accession numbers for Metagenome-Assembled-Genome Bins (MAGs) that passed NCBI quality filtering are provided in Table S2. Gene calling and functional annotation was performed by the Joint Genome Institute’s Integrated Microbial Genomes Expert Review.
I used CONCOCT via anvi’o and MetaBat to generate MAGs from the metagenome. I refined some MAGs in anvi’o, notably the cyanobacterial ones.
I used the python script “HTSeq.scripts.count” from HTSeq to stringently recruit transcripts to genes.
For the purposes of this document, the data have been processed ahead of time so that composite files can be imported and run through scripts. Please see code comments for how to process the raw data from IMG.
Let’s take a look at the data sourcing this figure.
| MAG | Function | activity | value | Metabolism | Taxonomy | Phylum | Organism |
|---|---|---|---|---|---|---|---|
| Bin_1 | Autotrophy (Rubisco) | Both | 1 | C metabolism | Cyanobacteria;Phormidium | Cyanobacteria | Phormidium (Bin_1) |
| Bin_1 | Nitrogen fixation (nifH+D/K) | Inactive | 1 | N metabolism | Cyanobacteria;Phormidium | Cyanobacteria | Phormidium (Bin_1) |
| Bin_1 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Cyanobacteria;Phormidium | Cyanobacteria | Phormidium (Bin_1) |
| Bin_1 | Photosystem I (psaA) | Both | 1 | OP | Cyanobacteria;Phormidium | Cyanobacteria | Phormidium (Bin_1) |
| Bin_1 | Photosystem II (psbA) | Both | 1 | OP | Cyanobacteria;Phormidium | Cyanobacteria | Phormidium (Bin_1) |
| Bin_1 | Sulfite oxidation (aprA) | Both | 1 | S cycling | Cyanobacteria;Phormidium | Cyanobacteria | Phormidium (Bin_1) |
| bin_101 | Autotrophy WL Pathway (acsB) | Day | 1 | C metabolism | Deltaproteobacteria;Desulfobacteraceae | Deltaproteobacteria | Desulfobacteraceae (bin_101) |
| bin_101 | H2 oxidation (hupL/hydB) | Night | 1 | Oxidative pathways | Deltaproteobacteria;Desulfobacteraceae | Deltaproteobacteria | Desulfobacteraceae (bin_101) |
| bin_101 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Deltaproteobacteria;Desulfobacteraceae | Deltaproteobacteria | Desulfobacteraceae (bin_101) |
| bin_101 | S reduction/oxidation (dsrA/rdsrA) | Both | 1 | S cycling | Deltaproteobacteria;Desulfobacteraceae | Deltaproteobacteria | Desulfobacteraceae (bin_101) |
| bin_101 | Sulfite oxidation (aprA) | Both | 1 | S cycling | Deltaproteobacteria;Desulfobacteraceae | Deltaproteobacteria | Desulfobacteraceae (bin_101) |
| bin_118 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Bacteria | Bacteria | Bacteria (bin_118) |
| bin_118 | S reduction/oxidation (dsrA/rdsrA) | Inactive | 1 | S cycling | Bacteria | Bacteria | Bacteria (bin_118) |
| bin_118 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteria | Bacteria | Bacteria (bin_118) |
| bin_122 | Autotrophy (Rubisco) | Inactive | 1 | C metabolism | Betaproteobacteria;Candidatus Accumulibacter | Betaproteobacteria | Candidatus Accumulibacter (bin_122) |
| bin_122 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Day | 1 | Oxidative pathways | Betaproteobacteria;Candidatus Accumulibacter | Betaproteobacteria | Candidatus Accumulibacter (bin_122) |
| bin_127 | Autotrophy (Rubisco) | Inactive | 1 | C metabolism | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_127) |
| bin_127 | Denitrification (nirK) | Inactive | 1 | N metabolism | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_127) |
| bin_127 | H2 oxidation (hupL/hydB) | Both | 1 | Oxidative pathways | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_127) |
| bin_127 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_127) |
| bin_127 | S reduction/oxidation (dsrA/rdsrA) | Night | 1 | S cycling | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_127) |
| bin_127 | Sulfide redox (fcc) | Both | 1 | S cycling | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_127) |
| bin_127 | Sulfite oxidation (aprA) | Night | 1 | S cycling | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_127) |
| bin_131 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Betaproteobacteria;Collimonas | Betaproteobacteria | Collimonas (bin_131) |
| bin_131 | S reduction/oxidation (dsrA/rdsrA) | Inactive | 1 | S cycling | Betaproteobacteria;Collimonas | Betaproteobacteria | Collimonas (bin_131) |
| bin_131 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Betaproteobacteria;Collimonas | Betaproteobacteria | Collimonas (bin_131) |
| bin_132 | Nitrogen fixation (nifH+D/K) | Day | 1 | N metabolism | Bacteroidetes;Paludibacter | Bacteroidetes | Paludibacter (bin_132) |
| bin_132 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Bacteroidetes;Paludibacter | Bacteroidetes | Paludibacter (bin_132) |
| bin_143 | Autotrophy (Rubisco) | Both | 1 | C metabolism | Cyanobacteria;Pseudanabaena | Cyanobacteria | Pseudanabaena (bin_143) |
| bin_143 | Nitrogen fixation (nifH+D/K) | Inactive | 1 | N metabolism | Cyanobacteria;Pseudanabaena | Cyanobacteria | Pseudanabaena (bin_143) |
| bin_143 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Cyanobacteria;Pseudanabaena | Cyanobacteria | Pseudanabaena (bin_143) |
| bin_143 | Photosystem I (psaA) | Both | 1 | OP | Cyanobacteria;Pseudanabaena | Cyanobacteria | Pseudanabaena (bin_143) |
| bin_143 | Photosystem II (psbA) | Night | 1 | OP | Cyanobacteria;Pseudanabaena | Cyanobacteria | Pseudanabaena (bin_143) |
| bin_143 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Cyanobacteria;Pseudanabaena | Cyanobacteria | Pseudanabaena (bin_143) |
| bin_182 | H2 oxidation (hupL/hydB) | Inactive | 1 | Oxidative pathways | Bacteria | Bacteria | Bacteria (bin_182) |
| bin_182 | Nitrogen fixation (nifH+D/K) | Day | 1 | N metabolism | Bacteria | Bacteria | Bacteria (bin_182) |
| bin_182 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Bacteria | Bacteria | Bacteria (bin_182) |
| bin_182 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteria | Bacteria | Bacteria (bin_182) |
| bin_199 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Spirochaetes | Spirochaetes | Spirochaetes (bin_199) |
| bin_199 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Spirochaetes | Spirochaetes | Spirochaetes (bin_199) |
| bin_207 | Nitrogen fixation (nifH+D/K) | Inactive | 1 | N metabolism | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_207) |
| bin_207 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_207) |
| bin_207 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_207) |
| bin_209 | H2 oxidation (hupL/hydB) | Inactive | 1 | Oxidative pathways | Deltaproteobacteria;Halobacteriovorax | Deltaproteobacteria | Halobacteriovorax (bin_209) |
| bin_209 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Deltaproteobacteria;Halobacteriovorax | Deltaproteobacteria | Halobacteriovorax (bin_209) |
| bin_227 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Bacteroidetes;Flavobacterium | Bacteroidetes | Flavobacterium (bin_227) |
| bin_228 | Denitrification (nirK) | Inactive | 1 | N metabolism | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_228) |
| bin_228 | H2 oxidation (hupL/hydB) | Inactive | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_228) |
| bin_228 | Nitrogen fixation (nifH+D/K) | Inactive | 1 | N metabolism | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_228) |
| bin_228 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_228) |
| bin_228 | S reduction/oxidation (dsrA/rdsrA) | Inactive | 1 | S cycling | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_228) |
| bin_228 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_228) |
| bin_229 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Betaproteobacteria;Rhodoferax | Betaproteobacteria | Rhodoferax (bin_229) |
| bin_229 | Sulfide redox (fcc) | Inactive | 1 | S cycling | Betaproteobacteria;Rhodoferax | Betaproteobacteria | Rhodoferax (bin_229) |
| bin_229 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Betaproteobacteria;Rhodoferax | Betaproteobacteria | Rhodoferax (bin_229) |
| bin_235_243 | Autotrophy (Rubisco) | Both | 1 | C metabolism | Cyanobacteria;Planktothrix | Cyanobacteria | Planktothrix (bin_235_243) |
| bin_235_243 | Nitrogen fixation (nifH+D/K) | Both | 1 | N metabolism | Cyanobacteria;Planktothrix | Cyanobacteria | Planktothrix (bin_235_243) |
| bin_235_243 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Cyanobacteria;Planktothrix | Cyanobacteria | Planktothrix (bin_235_243) |
| bin_235_243 | Photosystem I (psaA) | Both | 1 | OP | Cyanobacteria;Planktothrix | Cyanobacteria | Planktothrix (bin_235_243) |
| bin_235_243 | Photosystem II (psbA) | Both | 1 | OP | Cyanobacteria;Planktothrix | Cyanobacteria | Planktothrix (bin_235_243) |
| bin_235_243 | Sulfite oxidation (aprA) | Day | 1 | S cycling | Cyanobacteria;Planktothrix | Cyanobacteria | Planktothrix (bin_235_243) |
| bin_256 | Autotrophy (Rubisco) | Both | 1 | C metabolism | Cyanobacteria;Spirulina | Cyanobacteria | Spirulina (bin_256) |
| bin_256 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Cyanobacteria;Spirulina | Cyanobacteria | Spirulina (bin_256) |
| bin_256 | Photosystem I (psaA) | Both | 1 | OP | Cyanobacteria;Spirulina | Cyanobacteria | Spirulina (bin_256) |
| bin_256 | Photosystem II (psbA) | Both | 1 | OP | Cyanobacteria;Spirulina | Cyanobacteria | Spirulina (bin_256) |
| bin_256 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Cyanobacteria;Spirulina | Cyanobacteria | Spirulina (bin_256) |
| bin_26 | Autotrophy WL Pathway (acsB) | Both | 1 | C metabolism | Deltaproteobacteria;Desulfobacula | Deltaproteobacteria | Desulfobacula (bin_26) |
| bin_26 | H2 oxidation (hupL/hydB) | Day | 1 | Oxidative pathways | Deltaproteobacteria;Desulfobacula | Deltaproteobacteria | Desulfobacula (bin_26) |
| bin_26 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Deltaproteobacteria;Desulfobacula | Deltaproteobacteria | Desulfobacula (bin_26) |
| bin_26 | S reduction/oxidation (dsrA/rdsrA) | Both | 1 | S cycling | Deltaproteobacteria;Desulfobacula | Deltaproteobacteria | Desulfobacula (bin_26) |
| bin_26 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Deltaproteobacteria;Desulfobacula | Deltaproteobacteria | Desulfobacula (bin_26) |
| bin_28 | Denitrification (nirK) | Inactive | 1 | N metabolism | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_28) |
| bin_28 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_28) |
| bin_28 | Sulfite oxidation (aprA) | Day | 1 | S cycling | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_28) |
| Bin_3_1 | Autotrophy (Rubisco) | Night | 1 | C metabolism | Unknown | Unknown | Bacillariophyte 1 (Bin_3_1) |
| Bin_3_1 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Day | 1 | Oxidative pathways | Unknown | Unknown | Bacillariophyte 1 (Bin_3_1) |
| Bin_3_1 | Photosystem I (psaA) | Night | 1 | OP | Unknown | Unknown | Bacillariophyte 1 (Bin_3_1) |
| Bin_3_1 | Photosystem II (psbA) | Both | 1 | OP | Unknown | Unknown | Bacillariophyte 1 (Bin_3_1) |
| Bin_3_1 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Unknown | Unknown | Bacillariophyte 1 (Bin_3_1) |
| Bin_3_3 | Autotrophy (Rubisco) | Both | 1 | C metabolism | Unknown | Unknown | Bacillariophyte 2 (Bin_3_3) |
| Bin_3_3 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Unknown | Unknown | Bacillariophyte 2 (Bin_3_3) |
| Bin_3_3 | Photosystem I (psaA) | Both | 1 | OP | Unknown | Unknown | Bacillariophyte 2 (Bin_3_3) |
| Bin_3_3 | Photosystem II (psbA) | Both | 1 | OP | Unknown | Unknown | Bacillariophyte 2 (Bin_3_3) |
| Bin_3_3 | S reduction/oxidation (dsrA/rdsrA) | Inactive | 1 | S cycling | Unknown | Unknown | Bacillariophyte 2 (Bin_3_3) |
| Bin_3_3 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Unknown | Unknown | Bacillariophyte 2 (Bin_3_3) |
| Bin_3_3 | Thiosulfate oxidation (soxA) | Inactive | 1 | S cycling | Unknown | Unknown | Bacillariophyte 2 (Bin_3_3) |
| bin_33 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_33) |
| Bin_4_4-contigs | Autotrophy (Rubisco) | Day | 1 | C metabolism | Betaproteobacteria;Hydrogenophaga | Betaproteobacteria | Hydrogenophaga (Bin_4_4-contigs) |
| Bin_4_4-contigs | H2 oxidation (hupL/hydB) | Day | 1 | Oxidative pathways | Betaproteobacteria;Hydrogenophaga | Betaproteobacteria | Hydrogenophaga (Bin_4_4-contigs) |
| Bin_4_4-contigs | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Betaproteobacteria;Hydrogenophaga | Betaproteobacteria | Hydrogenophaga (Bin_4_4-contigs) |
| Bin_4_4-contigs | Sulfide redox (fcc) | Night | 1 | S cycling | Betaproteobacteria;Hydrogenophaga | Betaproteobacteria | Hydrogenophaga (Bin_4_4-contigs) |
| Bin_4_4-contigs | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Betaproteobacteria;Hydrogenophaga | Betaproteobacteria | Hydrogenophaga (Bin_4_4-contigs) |
| Bin_4_4-contigs | Thiosulfate oxidation (soxA) | Inactive | 1 | S cycling | Betaproteobacteria;Hydrogenophaga | Betaproteobacteria | Hydrogenophaga (Bin_4_4-contigs) |
| bin_45 | H2 oxidation (hupL/hydB) | Inactive | 1 | Oxidative pathways | Gammaproteobacteria;Methylococcaceae | Gammaproteobacteria | Methylococcaceae (bin_45) |
| bin_45 | Methane oxidation (mmoC) | Inactive | 1 | Oxidative pathways | Gammaproteobacteria;Methylococcaceae | Gammaproteobacteria | Methylococcaceae (bin_45) |
| bin_45 | Nitrogen fixation (nifH+D/K) | Night | 1 | N metabolism | Gammaproteobacteria;Methylococcaceae | Gammaproteobacteria | Methylococcaceae (bin_45) |
| bin_45 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Inactive | 1 | Oxidative pathways | Gammaproteobacteria;Methylococcaceae | Gammaproteobacteria | Methylococcaceae (bin_45) |
| bin_45 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Gammaproteobacteria;Methylococcaceae | Gammaproteobacteria | Methylococcaceae (bin_45) |
| bin_45 | Thiosulfate oxidation (soxA) | Inactive | 1 | S cycling | Gammaproteobacteria;Methylococcaceae | Gammaproteobacteria | Methylococcaceae (bin_45) |
| bin_49 | H2 oxidation (hupL/hydB) | Night | 1 | Oxidative pathways | Epsilonproteobacteria;Sulfuricurvum | Epsilonproteobacteria | Sulfuricurvum (bin_49) |
| bin_49 | Nitrogen fixation (nifH+D/K) | Both | 1 | N metabolism | Epsilonproteobacteria;Sulfuricurvum | Epsilonproteobacteria | Sulfuricurvum (bin_49) |
| bin_49 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Epsilonproteobacteria;Sulfuricurvum | Epsilonproteobacteria | Sulfuricurvum (bin_49) |
| bin_49 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Epsilonproteobacteria;Sulfuricurvum | Epsilonproteobacteria | Sulfuricurvum (bin_49) |
| bin_50 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteria | Bacteria | Bacteria (bin_50) |
| bin_57 | Denitrification (nirK) | Inactive | 1 | N metabolism | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_57) |
| bin_57 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_57) |
| bin_57 | S reduction/oxidation (dsrA/rdsrA) | Inactive | 1 | S cycling | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_57) |
| Bin_6_3-contigs | H2 oxidation (hupL/hydB) | Night | 1 | Oxidative pathways | Epsilonproteobacteria;Sulfurimonas | Epsilonproteobacteria | Sulfurimonas (Bin_6_3-contigs) |
| Bin_6_3-contigs | Nitrogen fixation (nifH+D/K) | Day | 1 | N metabolism | Epsilonproteobacteria;Sulfurimonas | Epsilonproteobacteria | Sulfurimonas (Bin_6_3-contigs) |
| Bin_6_3-contigs | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Epsilonproteobacteria;Sulfurimonas | Epsilonproteobacteria | Sulfurimonas (Bin_6_3-contigs) |
| Bin_6_9-contigs | H2 oxidation (hupL/hydB) | Both | 1 | Oxidative pathways | Epsilonproteobacteria;Arcobacter | Epsilonproteobacteria | Arcobacter (Bin_6_9-contigs) |
| Bin_6_9-contigs | Nitrogen fixation (nifH+D/K) | Both | 1 | N metabolism | Epsilonproteobacteria;Arcobacter | Epsilonproteobacteria | Arcobacter (Bin_6_9-contigs) |
| Bin_6_9-contigs | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Epsilonproteobacteria;Arcobacter | Epsilonproteobacteria | Arcobacter (Bin_6_9-contigs) |
| Bin_6_9-contigs | S reduction/oxidation (dsrA/rdsrA) | Inactive | 1 | S cycling | Epsilonproteobacteria;Arcobacter | Epsilonproteobacteria | Arcobacter (Bin_6_9-contigs) |
| bin_69 | Denitrification (nirK) | Inactive | 1 | N metabolism | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_69) |
| bin_69 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_69) |
| Bin_7_3-contigs | Nitrogen fixation (nifH+D/K) | Inactive | 1 | N metabolism | Bacteria | Bacteria | Bacteria (Bin_7_3-contigs) |
| Bin_7_3-contigs | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Bacteria | Bacteria | Bacteria (Bin_7_3-contigs) |
| Bin_7_3-contigs | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteria | Bacteria | Bacteria (Bin_7_3-contigs) |
| bin_9 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Night | 1 | Oxidative pathways | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_9) |
| bin_9 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_9) |
| bin_91 | Autotrophy (Rubisco) | Inactive | 1 | C metabolism | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_91) |
| bin_91 | Oxygen respiration (cbo3, cbb3, cox1, cb1) | Both | 1 | Oxidative pathways | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_91) |
| bin_91 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Betaproteobacteria | Betaproteobacteria | Betaproteobacteria (bin_91) |
| bin_92 | Sulfite oxidation (aprA) | Inactive | 1 | S cycling | Bacteroidetes | Bacteroidetes | Bacteroidetes (bin_92) |
The column descriptions are:
So, here is Figure 1: Detection of transcripts from marker genes of key metabolic/biogeochemical processes in MAGs (see Table S2 for details).
Let’s take a look at the data sourcing this figure.
| Gene | Organism | label | time | cds_length | accession | metric | TPM |
|---|---|---|---|---|---|---|---|
| scaffold_102__MIS_10000103.27 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_100001039 | CDS_TPM_bin | 16.781 |
| scaffold_102__MIS_10000103.27 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_100001039 | CDS_TPM_bin | 5.447 |
| scaffold_102__MIS_10000103.27 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_100001039 | CDS_TPM_bin | 0.100 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | night | 423 | 3300002026_MIS_100198717 | CDS_TPM_bin | 3149.629 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | day | 423 | 3300002026_MIS_100198717 | CDS_TPM_bin | 2531.983 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | night | 423 | 3300002026_MIS_100198717 | CDS_TPM_bin | 3621.759 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | day | 423 | 3300002026_MIS_100198717 | CDS_TPM_bin | 6424.368 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | night | 423 | 3300002026_MIS_100198717 | CDS_TPM_bin | 3754.636 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_bin | 104.754 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_bin | 225.563 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_bin | 1367.658 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_bin | 332.286 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_bin | 101.898 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_bin | 1865.086 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | night | 2184 | 3300002027_MIS_101937872 | CDS_TPM_bin | 11868.725 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | night | 2184 | 3300002027_MIS_101937872 | CDS_TPM_bin | 801.535 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | day | 2184 | 3300002027_MIS_101937872 | CDS_TPM_bin | 2854.235 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | day | 2184 | 3300002027_MIS_101937872 | CDS_TPM_bin | 5089.447 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | day | 2184 | 3300002027_MIS_101937872 | CDS_TPM_bin | 13369.228 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | night | 2184 | 3300002027_MIS_101937872 | CDS_TPM_bin | 15691.215 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | night | 1143 | 3300002024_MIS_11000321 | CDS_TPM_bin | 1177.398 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | day | 1143 | 3300002024_MIS_11000321 | CDS_TPM_bin | 1394.923 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | day | 1143 | 3300002024_MIS_11000321 | CDS_TPM_bin | 1123.065 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | night | 1143 | 3300002024_MIS_11000321 | CDS_TPM_bin | 2452.040 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | night | 1143 | 3300002024_MIS_11000321 | CDS_TPM_bin | 5.959 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | day | 1143 | 3300002024_MIS_11000321 | CDS_TPM_bin | 1177.762 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | night | 1629 | 3300002026_MIS_100342444 | CDS_TPM_bin | 287.266 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | night | 1629 | 3300002026_MIS_100342444 | CDS_TPM_bin | 355.418 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | day | 1629 | 3300002026_MIS_100342444 | CDS_TPM_bin | 878.035 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | day | 1629 | 3300002026_MIS_100342444 | CDS_TPM_bin | 897.115 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | night | 1629 | 3300002026_MIS_100342444 | CDS_TPM_bin | 1107.766 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | day | 1629 | 3300002026_MIS_100342444 | CDS_TPM_bin | 197.111 |
| scaffold_5889__MIS_10005890.143 | Pseudanabaena | psaA | night | 2253 | 3300002026_MIS_1000589039 | CDS_TPM_bin | 53.683 |
| scaffold_5889__MIS_10005890.143 | Pseudanabaena | psaA | night | 2253 | 3300002026_MIS_1000589039 | CDS_TPM_bin | 432.863 |
| scaffold_5889__MIS_10005890.143 | Pseudanabaena | psaA | day | 2253 | 3300002026_MIS_1000589039 | CDS_TPM_bin | 369.682 |
| scaffold_9511__MIS_10009512_merged | Bacillariophyte 1 (Bin_3_1) | psaA | night | 642 | 3300002026_MIS_1000951211 | CDS_TPM_bin | 0.100 |
| scaffold_9511__MIS_10009512_merged | Bacillariophyte 1 (Bin_3_1) | psaA | day | 642 | 3300002026_MIS_1000951211 | CDS_TPM_bin | 0.100 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | day | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_bin | 595.165 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | night | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_bin | 149.293 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | night | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_bin | 393.842 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | day | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_bin | 303.348 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | night | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_bin | 441.218 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | day | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_bin | 631.770 |
| scaffold_3907__MIS_10003908.31 | Pseudanabaena | psbA_2 | day | 1074 | 3300002026_MIS_100039089 | CDS_TPM_bin | 0.100 |
| scaffold_3907__MIS_10003908.31 | Pseudanabaena | psbA_2 | night | 1074 | 3300002026_MIS_100039089 | CDS_TPM_bin | 0.100 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | night | 1083 | 3300002026_MIS_100299244 | CDS_TPM_bin | 3333.413 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | day | 1083 | 3300002026_MIS_100299244 | CDS_TPM_bin | 2762.249 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | night | 1083 | 3300002026_MIS_100299244 | CDS_TPM_bin | 9235.113 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | night | 1083 | 3300002026_MIS_100299244 | CDS_TPM_bin | 8760.529 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | day | 1083 | 3300002026_MIS_100299244 | CDS_TPM_bin | 4406.388 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | day | 1083 | 3300002026_MIS_100299244 | CDS_TPM_bin | 5976.568 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | day | 1083 | 3300002026_MIS_100073893 | CDS_TPM_bin | 1618.276 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | night | 1083 | 3300002026_MIS_100073893 | CDS_TPM_bin | 4066.183 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | night | 1083 | 3300002026_MIS_100073893 | CDS_TPM_bin | 8801.911 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | night | 1083 | 3300002026_MIS_100073893 | CDS_TPM_bin | 3637.076 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | day | 1083 | 3300002026_MIS_100073893 | CDS_TPM_bin | 2123.204 |
| scaffold_775__MIS_10000776.97 | Pseudanabaena | psbA_3 | night | 1083 | 3300002026_MIS_1000077629 | CDS_TPM_bin | 900.498 |
| scaffold_775__MIS_10000776.97 | Pseudanabaena | psbA_3 | night | 1083 | 3300002026_MIS_1000077629 | CDS_TPM_bin | 446.713 |
| scaffold_775__MIS_10000776.97 | Pseudanabaena | psbA_3 | day | 1083 | 3300002026_MIS_1000077629 | CDS_TPM_bin | 0.100 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 450 | 3300002026_MIS_100155921 | CDS_TPM_bin | 136.727 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 450 | 3300002026_MIS_100155921 | CDS_TPM_bin | 72.021 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 450 | 3300002026_MIS_100155921 | CDS_TPM_bin | 1731.317 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 450 | 3300002026_MIS_100155921 | CDS_TPM_bin | 2485.111 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 450 | 3300002026_MIS_100155921 | CDS_TPM_bin | 90.586 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | night | 843 | 3300002027_MIS_101322185 | CDS_TPM_bin | 5737.633 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | night | 843 | 3300002027_MIS_101322185 | CDS_TPM_bin | 2954.696 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | day | 843 | 3300002027_MIS_101322185 | CDS_TPM_bin | 2228.001 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | night | 843 | 3300002027_MIS_101322185 | CDS_TPM_bin | 6461.596 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | day | 843 | 3300002027_MIS_101322185 | CDS_TPM_bin | 4525.460 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | day | 843 | 3300002027_MIS_101322185 | CDS_TPM_bin | 14668.461 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 1083 | 3300002026_MIS_100266613 | CDS_TPM_bin | 60780.367 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 1083 | 3300002026_MIS_100266613 | CDS_TPM_bin | 3324.335 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 1083 | 3300002026_MIS_100266613 | CDS_TPM_bin | 594.755 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 1083 | 3300002026_MIS_100266613 | CDS_TPM_bin | 10267.115 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 1083 | 3300002026_MIS_100266613 | CDS_TPM_bin | 6735.751 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 1083 | 3300002026_MIS_100266613 | CDS_TPM_bin | 59382.425 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 726 | 3300002026_MIS_100267815 | CDS_TPM_bin | 19422.863 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 726 | 3300002026_MIS_100267815 | CDS_TPM_bin | 45509.865 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 726 | 3300002026_MIS_100267815 | CDS_TPM_bin | 150154.271 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 726 | 3300002026_MIS_100267815 | CDS_TPM_bin | 88582.873 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 726 | 3300002026_MIS_100267815 | CDS_TPM_bin | 9591.234 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 726 | 3300002026_MIS_100267815 | CDS_TPM_bin | 2772.554 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | night | 963 | 3300002026_MIS_100299206 | CDS_TPM_bin | 636911.918 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | day | 963 | 3300002026_MIS_100299206 | CDS_TPM_bin | 467985.738 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | night | 963 | 3300002026_MIS_100299206 | CDS_TPM_bin | 497915.112 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | day | 963 | 3300002026_MIS_100299206 | CDS_TPM_bin | 641085.161 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | day | 963 | 3300002026_MIS_100299206 | CDS_TPM_bin | 698647.152 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | night | 963 | 3300002026_MIS_100299206 | CDS_TPM_bin | 494102.406 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 843 | 3300002026_MIS_1000067552 | CDS_TPM_bin | 45643.053 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 843 | 3300002026_MIS_1000067552 | CDS_TPM_bin | 11356.641 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 843 | 3300002026_MIS_1000067552 | CDS_TPM_bin | 71540.755 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 843 | 3300002026_MIS_1000067552 | CDS_TPM_bin | 19027.887 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 843 | 3300002026_MIS_1000067552 | CDS_TPM_bin | 19914.704 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 843 | 3300002026_MIS_1000067552 | CDS_TPM_bin | 3929.964 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 345 | 3300002026_MIS_1000077350 | CDS_TPM_bin | 142074.341 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 345 | 3300002026_MIS_1000077350 | CDS_TPM_bin | 68388.639 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 345 | 3300002026_MIS_1000077350 | CDS_TPM_bin | 40590.185 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 345 | 3300002026_MIS_1000077350 | CDS_TPM_bin | 36332.847 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 345 | 3300002026_MIS_1000077350 | CDS_TPM_bin | 8859.708 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 345 | 3300002026_MIS_1000077350 | CDS_TPM_bin | 40443.020 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | day | 969 | 3300002024_MIS_11796321 | CDS_TPM_bin | 509.511 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | night | 969 | 3300002024_MIS_11796321 | CDS_TPM_bin | 168.705 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | night | 969 | 3300002024_MIS_11796321 | CDS_TPM_bin | 593.405 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | day | 969 | 3300002024_MIS_11796321 | CDS_TPM_bin | 684.977 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | day | 969 | 3300002024_MIS_11796321 | CDS_TPM_bin | 936.966 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | night | 969 | 3300002024_MIS_11796321 | CDS_TPM_bin | 1031.116 |
| scaffold_102__MIS_10000103.27 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_100001039 | CDS_TPM_sample | 0.237 |
| scaffold_102__MIS_10000103.27 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_100001039 | CDS_TPM_sample | 0.157 |
| scaffold_102__MIS_10000103.27 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_100001039 | CDS_TPM_sample | 0.000 |
| scaffold_147734__MIS_10107406.1 | Unassigned | psaA | night | 1713 | 3300002027_MIS_101074061 | CDS_TPM_sample | 0.000 |
| scaffold_147734__MIS_10107406.1 | Unassigned | psaA | day | 1713 | 3300002027_MIS_101074061 | CDS_TPM_sample | 0.000 |
| scaffold_149953__MIS_10109621.1 | Unassigned | psaA | night | 1491 | 3300002027_MIS_101096211 | CDS_TPM_sample | 0.360 |
| scaffold_149953__MIS_10109621.1 | Unassigned | psaA | day | 1491 | 3300002027_MIS_101096211 | CDS_TPM_sample | 0.000 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | night | 423 | 3300002026_MIS_100198717 | CDS_TPM_sample | 19.262 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | day | 423 | 3300002026_MIS_100198717 | CDS_TPM_sample | 19.947 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | night | 423 | 3300002026_MIS_100198717 | CDS_TPM_sample | 4.059 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | day | 423 | 3300002026_MIS_100198717 | CDS_TPM_sample | 19.825 |
| scaffold_19870__MIS_10019871.23 | Planktothrix | psaA | night | 423 | 3300002026_MIS_100198717 | CDS_TPM_sample | 27.901 |
| scaffold_234100__MIS_1007579.1 | Unassigned | psaA | day | 1461 | 3300002024_MIS_10075791 | CDS_TPM_sample | 0.216 |
| scaffold_234100__MIS_1007579.1 | Unassigned | psaA | night | 1461 | 3300002024_MIS_10075791 | CDS_TPM_sample | 1.940 |
| scaffold_234100__MIS_1007579.1 | Unassigned | psaA | day | 1461 | 3300002024_MIS_10075791 | CDS_TPM_sample | 1.545 |
| scaffold_234100__MIS_1007579.1 | Unassigned | psaA | night | 1461 | 3300002024_MIS_10075791 | CDS_TPM_sample | 2.020 |
| scaffold_234100__MIS_1007579.1 | Unassigned | psaA | night | 1461 | 3300002024_MIS_10075791 | CDS_TPM_sample | 0.131 |
| scaffold_240855__MIS_1013700.1 | Unassigned | psaA | day | 558 | 3300002024_MIS_10137001 | CDS_TPM_sample | 0.000 |
| scaffold_240855__MIS_1013700.1 | Unassigned | psaA | night | 558 | 3300002024_MIS_10137001 | CDS_TPM_sample | 0.000 |
| scaffold_251767__MIS_10187780.1 | Unassigned | psaA | day | 459 | 3300002027_MIS_101877801 | CDS_TPM_sample | 5.014 |
| scaffold_251767__MIS_10187780.1 | Unassigned | psaA | night | 459 | 3300002027_MIS_101877801 | CDS_TPM_sample | 1.544 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_sample | 4.075 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_sample | 2.111 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_sample | 19.354 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | night | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_sample | 9.566 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_sample | 1.818 |
| scaffold_2657__MIS_10002658.98 | Bacillariophyte 2 (Bin_3_3) | psaA | day | 2259 | 3300002026_MIS_1000265839 | CDS_TPM_sample | 18.561 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | night | 2184 | 3300002027_MIS_101937872 | CDS_TPM_sample | 1040.865 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | night | 2184 | 3300002027_MIS_101937872 | CDS_TPM_sample | 22.451 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | day | 2184 | 3300002027_MIS_101937872 | CDS_TPM_sample | 81.430 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | day | 2184 | 3300002027_MIS_101937872 | CDS_TPM_sample | 417.602 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | day | 2184 | 3300002027_MIS_101937872 | CDS_TPM_sample | 436.691 |
| scaffold_334045__MIS_10193787_merged | Phormidium | psaA | night | 2184 | 3300002027_MIS_101937872 | CDS_TPM_sample | 2197.553 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | night | 1143 | 3300002024_MIS_11000321 | CDS_TPM_sample | 103.256 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | day | 1143 | 3300002024_MIS_11000321 | CDS_TPM_sample | 39.796 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | day | 1143 | 3300002024_MIS_11000321 | CDS_TPM_sample | 36.684 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | night | 1143 | 3300002024_MIS_11000321 | CDS_TPM_sample | 343.408 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | night | 1143 | 3300002024_MIS_11000321 | CDS_TPM_sample | 0.167 |
| scaffold_334215__MIS_1100032.1 | Phormidium | psaA | day | 1143 | 3300002024_MIS_11000321 | CDS_TPM_sample | 96.638 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | night | 1629 | 3300002026_MIS_100342444 | CDS_TPM_sample | 40.232 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | night | 1629 | 3300002026_MIS_100342444 | CDS_TPM_sample | 9.955 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | day | 1629 | 3300002026_MIS_100342444 | CDS_TPM_sample | 72.045 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | day | 1629 | 3300002026_MIS_100342444 | CDS_TPM_sample | 29.303 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | night | 1629 | 3300002026_MIS_100342444 | CDS_TPM_sample | 97.149 |
| scaffold_34243__MIS_10034244.13 | Phormidium | psaA | day | 1629 | 3300002026_MIS_100342444 | CDS_TPM_sample | 5.623 |
| scaffold_343756__MIS_1109041.1 | Unassigned | psaA | night | 1119 | 3300002024_MIS_11090411 | CDS_TPM_sample | 0.479 |
| scaffold_343756__MIS_1109041.1 | Unassigned | psaA | night | 1119 | 3300002024_MIS_11090411 | CDS_TPM_sample | 2.216 |
| scaffold_343756__MIS_1109041.1 | Unassigned | psaA | day | 1119 | 3300002024_MIS_11090411 | CDS_TPM_sample | 0.000 |
| scaffold_343846__MIS_1109128.1 | Unassigned | psaA | night | 1119 | 3300002024_MIS_11091281 | CDS_TPM_sample | 0.719 |
| scaffold_343846__MIS_1109128.1 | Unassigned | psaA | day | 1119 | 3300002024_MIS_11091281 | CDS_TPM_sample | 0.144 |
| scaffold_343846__MIS_1109128.1 | Unassigned | psaA | night | 1119 | 3300002024_MIS_11091281 | CDS_TPM_sample | 0.633 |
| scaffold_47288__MIS_10010142.13 | Unassigned | psaA | day | 711 | 3300002027_MIS_100101424 | CDS_TPM_sample | 0.000 |
| scaffold_47288__MIS_10010142.13 | Unassigned | psaA | night | 711 | 3300002027_MIS_100101424 | CDS_TPM_sample | 0.000 |
| scaffold_5889__MIS_10005890.143 | Pseudanabaena | psaA | night | 2253 | 3300002026_MIS_1000589039 | CDS_TPM_sample | 0.157 |
| scaffold_5889__MIS_10005890.143 | Pseudanabaena | psaA | night | 2253 | 3300002026_MIS_1000589039 | CDS_TPM_sample | 0.119 |
| scaffold_5889__MIS_10005890.143 | Pseudanabaena | psaA | day | 2253 | 3300002026_MIS_1000589039 | CDS_TPM_sample | 0.286 |
| scaffold_92128__MIS_10052180.1 | Unassigned | psaA | night | 1737 | 3300002027_MIS_100521801 | CDS_TPM_sample | 1.544 |
| scaffold_92128__MIS_10052180.1 | Unassigned | psaA | night | 1737 | 3300002027_MIS_100521801 | CDS_TPM_sample | 1.632 |
| scaffold_92128__MIS_10052180.1 | Unassigned | psaA | day | 1737 | 3300002027_MIS_100521801 | CDS_TPM_sample | 0.836 |
| scaffold_92128__MIS_10052180.1 | Unassigned | psaA | day | 1737 | 3300002027_MIS_100521801 | CDS_TPM_sample | 0.442 |
| scaffold_9511__MIS_10009512_merged | Bacillariophyte 1 (Bin_3_1) | psaA | night | 642 | 3300002026_MIS_1000951211 | CDS_TPM_sample | 0.000 |
| scaffold_9511__MIS_10009512_merged | Bacillariophyte 1 (Bin_3_1) | psaA | day | 642 | 3300002026_MIS_1000951211 | CDS_TPM_sample | 0.000 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | day | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_sample | 19.440 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | night | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_sample | 4.182 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | night | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_sample | 34.539 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | day | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_sample | 8.654 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | night | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_sample | 61.793 |
| scaffold_10109__MIS_10010110.33 | Phormidium | psbA_2 | day | 1095 | 3300002026_MIS_1001011011 | CDS_TPM_sample | 51.838 |
| scaffold_3907__MIS_10003908.31 | Pseudanabaena | psbA_2 | day | 1074 | 3300002026_MIS_100039089 | CDS_TPM_sample | 0.000 |
| scaffold_3907__MIS_10003908.31 | Pseudanabaena | psbA_2 | night | 1074 | 3300002026_MIS_100039089 | CDS_TPM_sample | 0.000 |
| scaffold_103526__MIS_10063424.9 | Unassigned | psbA_3 | night | 1083 | 3300002027_MIS_100634243 | CDS_TPM_sample | 0.352 |
| scaffold_103526__MIS_10063424.9 | Unassigned | psbA_3 | day | 1083 | 3300002027_MIS_100634243 | CDS_TPM_sample | 0.000 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | night | 1083 | 3300002026_MIS_100299244 | CDS_TPM_sample | 93.369 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | day | 1083 | 3300002026_MIS_100299244 | CDS_TPM_sample | 226.649 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | night | 1083 | 3300002026_MIS_100299244 | CDS_TPM_sample | 1293.376 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | night | 1083 | 3300002026_MIS_100299244 | CDS_TPM_sample | 768.282 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | day | 1083 | 3300002026_MIS_100299244 | CDS_TPM_sample | 125.712 |
| scaffold_29923__MIS_10029924.7 | Phormidium | psbA_3 | day | 1083 | 3300002026_MIS_100299244 | CDS_TPM_sample | 195.218 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | day | 1083 | 3300002026_MIS_100073893 | CDS_TPM_sample | 12.749 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | night | 1083 | 3300002026_MIS_100073893 | CDS_TPM_sample | 30.216 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | night | 1083 | 3300002026_MIS_100073893 | CDS_TPM_sample | 9.865 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | night | 1083 | 3300002026_MIS_100073893 | CDS_TPM_sample | 22.243 |
| scaffold_7388__MIS_10007389.8 | Planktothrix | psbA_3 | day | 1083 | 3300002026_MIS_100073893 | CDS_TPM_sample | 6.552 |
| scaffold_775__MIS_10000776.97 | Pseudanabaena | psbA_3 | night | 1083 | 3300002026_MIS_1000077629 | CDS_TPM_sample | 0.248 |
| scaffold_775__MIS_10000776.97 | Pseudanabaena | psbA_3 | night | 1083 | 3300002026_MIS_1000077629 | CDS_TPM_sample | 1.308 |
| scaffold_775__MIS_10000776.97 | Pseudanabaena | psbA_3 | day | 1083 | 3300002026_MIS_1000077629 | CDS_TPM_sample | 0.000 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 450 | 3300002026_MIS_100155921 | CDS_TPM_sample | 3.936 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 450 | 3300002026_MIS_100155921 | CDS_TPM_sample | 0.717 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 450 | 3300002026_MIS_100155921 | CDS_TPM_sample | 30.886 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 450 | 3300002026_MIS_100155921 | CDS_TPM_sample | 35.168 |
| scaffold_15591__MIS_10015592.1 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 450 | 3300002026_MIS_100155921 | CDS_TPM_sample | 0.848 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | night | 843 | 3300002027_MIS_101322185 | CDS_TPM_sample | 42.637 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | night | 843 | 3300002027_MIS_101322185 | CDS_TPM_sample | 18.070 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | day | 843 | 3300002027_MIS_101322185 | CDS_TPM_sample | 2.623 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | night | 843 | 3300002027_MIS_101322185 | CDS_TPM_sample | 7.242 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | day | 843 | 3300002027_MIS_101322185 | CDS_TPM_sample | 13.965 |
| scaffold_172578__MIS_10132218_merged | Planktothrix | psbA_4 | day | 843 | 3300002027_MIS_101322185 | CDS_TPM_sample | 115.560 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 1083 | 3300002026_MIS_100266613 | CDS_TPM_sample | 46.810 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 1083 | 3300002026_MIS_100266613 | CDS_TPM_sample | 3.500 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 1083 | 3300002026_MIS_100266613 | CDS_TPM_sample | 5.666 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 1083 | 3300002026_MIS_100266613 | CDS_TPM_sample | 5.212 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 1083 | 3300002026_MIS_100266613 | CDS_TPM_sample | 3.876 |
| scaffold_26660__MIS_10026661.5 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 1083 | 3300002026_MIS_100266613 | CDS_TPM_sample | 36.309 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 726 | 3300002026_MIS_100267815 | CDS_TPM_sample | 20.450 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 726 | 3300002026_MIS_100267815 | CDS_TPM_sample | 23.102 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 726 | 3300002026_MIS_100267815 | CDS_TPM_sample | 115.642 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 726 | 3300002026_MIS_100267815 | CDS_TPM_sample | 54.163 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | night | 726 | 3300002026_MIS_100267815 | CDS_TPM_sample | 5.519 |
| scaffold_26780__MIS_10026781.16 | Bacillariophyte 1 (Bin_3_1) | psbA_4 | day | 726 | 3300002026_MIS_100267815 | CDS_TPM_sample | 26.414 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | night | 963 | 3300002026_MIS_100299206 | CDS_TPM_sample | 141.629 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | day | 963 | 3300002026_MIS_100299206 | CDS_TPM_sample | 12.137 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | night | 963 | 3300002026_MIS_100299206 | CDS_TPM_sample | 3.764 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | day | 963 | 3300002026_MIS_100299206 | CDS_TPM_sample | 13.732 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | day | 963 | 3300002026_MIS_100299206 | CDS_TPM_sample | 39.827 |
| scaffold_29919__MIS_10029920.21 | Spirulina | psbA_4 | night | 963 | 3300002026_MIS_100299206 | CDS_TPM_sample | 30.639 |
| scaffold_360104__MIS_1124561.1 | Unassigned | psbA_4 | day | 1083 | 3300002024_MIS_11245611 | CDS_TPM_sample | 5.510 |
| scaffold_360104__MIS_1124561.1 | Unassigned | psbA_4 | day | 1083 | 3300002024_MIS_11245611 | CDS_TPM_sample | 2.917 |
| scaffold_360104__MIS_1124561.1 | Unassigned | psbA_4 | night | 1083 | 3300002024_MIS_11245611 | CDS_TPM_sample | 45.141 |
| scaffold_360104__MIS_1124561.1 | Unassigned | psbA_4 | night | 1083 | 3300002024_MIS_11245611 | CDS_TPM_sample | 7.430 |
| scaffold_360104__MIS_1124561.1 | Unassigned | psbA_4 | night | 1083 | 3300002024_MIS_11245611 | CDS_TPM_sample | 0.529 |
| scaffold_360104__MIS_1124561.1 | Unassigned | psbA_4 | day | 1083 | 3300002024_MIS_11245611 | CDS_TPM_sample | 12.749 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 843 | 3300002026_MIS_1000067552 | CDS_TPM_sample | 645.916 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 843 | 3300002026_MIS_1000067552 | CDS_TPM_sample | 326.941 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 843 | 3300002026_MIS_1000067552 | CDS_TPM_sample | 1276.274 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 843 | 3300002026_MIS_1000067552 | CDS_TPM_sample | 178.116 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 843 | 3300002026_MIS_1000067552 | CDS_TPM_sample | 198.188 |
| scaffold_674__MIS_10000675_merged | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 843 | 3300002026_MIS_1000067552 | CDS_TPM_sample | 152.867 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 345 | 3300002026_MIS_1000077350 | CDS_TPM_sample | 2010.559 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 345 | 3300002026_MIS_1000077350 | CDS_TPM_sample | 680.593 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 345 | 3300002026_MIS_1000077350 | CDS_TPM_sample | 1168.530 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | night | 345 | 3300002026_MIS_1000077350 | CDS_TPM_sample | 340.104 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 345 | 3300002026_MIS_1000077350 | CDS_TPM_sample | 344.624 |
| scaffold_772__MIS_10000773.170 | Bacillariophyte 2 (Bin_3_3) | psbA_4 | day | 345 | 3300002026_MIS_1000077350 | CDS_TPM_sample | 721.496 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | day | 969 | 3300002024_MIS_11796321 | CDS_TPM_sample | 16.643 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | night | 969 | 3300002024_MIS_11796321 | CDS_TPM_sample | 4.725 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | night | 969 | 3300002024_MIS_11796321 | CDS_TPM_sample | 52.040 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | day | 969 | 3300002024_MIS_11796321 | CDS_TPM_sample | 56.204 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | day | 969 | 3300002024_MIS_11796321 | CDS_TPM_sample | 26.731 |
| scaffold_997195__MIS_1179632_merged | Phormidium | psbA_4 | night | 969 | 3300002024_MIS_11796321 | CDS_TPM_sample | 144.408 |
What do these data mean? This table has some of the same columns as above, here are some new ones.
Figure 2 and Supplemental Figure 4 source from this same table, but Supplemental Figure 4 presents the sample-normalized metric (CDS_TPM_sample) whereas Figure 2 uses the bin- and sample-normalized metric (CDS_TPM_bin).
Figure 2: Relative abundance of transcripts for photosystem genes normalized by total number of sequences in each sample.
This figure presents the relative expression of different versions of psbA genes in our oxyphototrophs. Let’s take a look at the data sourcing this figure.
| Organism | label | time | metric | ratio_of_transcripts | |
|---|---|---|---|---|---|
| 7 | Phormidium | psbA_2 | day | psbA_psaA | 0.020 |
| 9 | Phormidium | psbA_2 | day | psbA_psaA | 0.050 |
| 12 | Phormidium | psbA_2 | day | psbA_psaA | 0.041 |
| 13 | Phormidium | psbA_2 | night | psbA_psaA | 0.070 |
| 16 | Phormidium | psbA_2 | night | psbA_psaA | 0.015 |
| 18 | Phormidium | psbA_2 | night | psbA_psaA | 0.013 |
| 24 | Pseudanabaena | psbA_2 | day | psbA_psaA | 0.000 |
| 26 | Pseudanabaena | psbA_2 | night | psbA_psaA | 0.000 |
| 28 | Pseudanabaena | psbA_2 | night | psbA_psaA | 0.000 |
| 1 | Bacillariophyte 2 (Bin_3_3) | psbA_3+4 | day | psbA_psaA | 9.592 |
| 2 | Bacillariophyte 2 (Bin_3_3) | psbA_3+4 | day | psbA_psaA | 26.917 |
| 3 | Bacillariophyte 2 (Bin_3_3) | psbA_3+4 | day | psbA_psaA | 326.000 |
| 4 | Bacillariophyte 2 (Bin_3_3) | psbA_3+4 | night | psbA_psaA | 56.160 |
| 5 | Bacillariophyte 2 (Bin_3_3) | psbA_3+4 | night | psbA_psaA | 28.333 |
| 6 | Bacillariophyte 2 (Bin_3_3) | psbA_3+4 | night | psbA_psaA | 30.984 |
| 8 | Phormidium | psbA_3+4 | day | psbA_psaA | 0.218 |
| 10 | Phormidium | psbA_3+4 | day | psbA_psaA | 0.263 |
| 11 | Phormidium | psbA_3+4 | day | psbA_psaA | 0.697 |
| 14 | Phormidium | psbA_3+4 | night | psbA_psaA | 1.615 |
| 15 | Phormidium | psbA_3+4 | night | psbA_psaA | 0.346 |
| 17 | Phormidium | psbA_3+4 | night | psbA_psaA | 0.293 |
| 19 | Planktothrix | psbA_3+4 | day | psbA_psaA | 2.250 |
| 20 | Planktothrix | psbA_3+4 | day | psbA_psaA | 13.182 |
| 21 | Planktothrix | psbA_3+4 | night | psbA_psaA | 9.778 |
| 22 | Planktothrix | psbA_3+4 | night | psbA_psaA | 5.818 |
| 23 | Planktothrix | psbA_3+4 | night | psbA_psaA | 4.826 |
| 25 | Pseudanabaena | psbA_3+4 | day | psbA_psaA | 0.000 |
| 27 | Pseudanabaena | psbA_3+4 | night | psbA_psaA | 1.000 |
| 29 | Pseudanabaena | psbA_3+4 | night | psbA_psaA | 4.000 |
| 30 | Unassigned | psbA_3+4 | day | psbA_psaA | 1.542 |
| 31 | Unassigned | psbA_3+4 | day | psbA_psaA | 4.500 |
| 32 | Unassigned | psbA_3+4 | day | psbA_psaA | 10.000 |
| 33 | Unassigned | psbA_3+4 | night | psbA_psaA | 5.000 |
| 34 | Unassigned | psbA_3+4 | night | psbA_psaA | 1.071 |
| 35 | Unassigned | psbA_3+4 | night | psbA_psaA | 5.111 |
Figure 3: Ratio of transcript abundances for photosystem II (psbA) to photosystem I (psaA) genes in day and night, shown for each MAG (top) with box-and-whisker plots.
This figure presents the relative abundance of different versions of sqr genes in the Phormidium MAG. Let’s take a look at the data sourcing this figure.
| Gene | Organism | label | time | cds_length | metric | TPM | accession |
|---|---|---|---|---|---|---|---|
| scaffold_3907__MIS_10003908.16 | Pseudanabaena | sqrI | night | 1302 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100039085 |
| scaffold_3907__MIS_10003908.16 | Pseudanabaena | sqrI | night | 1302 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100039085 |
| scaffold_3907__MIS_10003908.16 | Pseudanabaena | sqrI | day | 1302 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100039085 |
| scaffold_3907__MIS_10003908.16 | Pseudanabaena | sqrI | day | 1302 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100039085 |
| scaffold_3907__MIS_10003908.16 | Pseudanabaena | sqrI | day | 1302 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100039085 |
| scaffold_3907__MIS_10003908.16 | Pseudanabaena | sqrI | night | 1302 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100039085 |
| scaffold_54969__MIS_10016899.18 | Phormidium | sqrI | day | 1323 | CDS_TPM_bin | 8.37 | 3300002027_MIS_100168996 |
| scaffold_54969__MIS_10016899.18 | Phormidium | sqrI | night | 1323 | CDS_TPM_bin | 25.43 | 3300002027_MIS_100168996 |
| scaffold_54969__MIS_10016899.18 | Phormidium | sqrI | day | 1323 | CDS_TPM_bin | 28.27 | 3300002027_MIS_100168996 |
| scaffold_54969__MIS_10016899.18 | Phormidium | sqrI | night | 1323 | CDS_TPM_bin | 36.33 | 3300002027_MIS_100168996 |
| scaffold_54969__MIS_10016899.18 | Phormidium | sqrI | day | 1323 | CDS_TPM_bin | 55.98 | 3300002027_MIS_100168996 |
| scaffold_54969__MIS_10016899.18 | Phormidium | sqrI | night | 1323 | CDS_TPM_bin | 10.30 | 3300002027_MIS_100168996 |
| scaffold_10109__MIS_10010110.20 | Phormidium | sqrII | day | 1314 | CDS_TPM_bin | 63.88 | 3300002026_MIS_100101107 |
| scaffold_10109__MIS_10010110.20 | Phormidium | sqrII | night | 1314 | CDS_TPM_bin | 31.10 | 3300002026_MIS_100101107 |
| scaffold_10109__MIS_10010110.20 | Phormidium | sqrII | night | 1314 | CDS_TPM_bin | 86.12 | 3300002026_MIS_100101107 |
| scaffold_10109__MIS_10010110.20 | Phormidium | sqrII | day | 1314 | CDS_TPM_bin | 85.37 | 3300002026_MIS_100101107 |
| scaffold_10109__MIS_10010110.20 | Phormidium | sqrII | day | 1314 | CDS_TPM_bin | 58.98 | 3300002026_MIS_100101107 |
| scaffold_10109__MIS_10010110.20 | Phormidium | sqrII | night | 1314 | CDS_TPM_bin | 198.28 | 3300002026_MIS_100101107 |
| scaffold_33821__MIS_10033822.23 | Planktothrix | sqrII | day | 1314 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100338228 |
| scaffold_33821__MIS_10033822.23 | Planktothrix | sqrII | night | 1314 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100338228 |
| scaffold_33821__MIS_10033822.23 | Planktothrix | sqrII | night | 1314 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100338228 |
| scaffold_33821__MIS_10033822.23 | Planktothrix | sqrII | night | 1314 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100338228 |
| scaffold_33821__MIS_10033822.23 | Planktothrix | sqrII | day | 1314 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100338228 |
| scaffold_33821__MIS_10033822.23 | Planktothrix | sqrII | day | 1314 | CDS_TPM_bin | 0.00 | 3300002026_MIS_100338228 |
| scaffold_775__MIS_10000776.112 | Pseudanabaena | sqrVI | night | 987 | CDS_TPM_bin | 0.00 | 3300002026_MIS_1000077633 |
| scaffold_775__MIS_10000776.112 | Pseudanabaena | sqrVI | day | 987 | CDS_TPM_bin | 0.00 | 3300002026_MIS_1000077633 |
| scaffold_775__MIS_10000776.112 | Pseudanabaena | sqrVI | day | 987 | CDS_TPM_bin | 0.00 | 3300002026_MIS_1000077633 |
| scaffold_775__MIS_10000776.112 | Pseudanabaena | sqrVI | night | 987 | CDS_TPM_bin | 0.00 | 3300002026_MIS_1000077633 |
| scaffold_775__MIS_10000776.112 | Pseudanabaena | sqrVI | night | 987 | CDS_TPM_bin | 0.00 | 3300002026_MIS_1000077633 |
| scaffold_775__MIS_10000776.112 | Pseudanabaena | sqrVI | day | 987 | CDS_TPM_bin | 0.00 | 3300002026_MIS_1000077633 |
Some of these are familiar. I want to point out this column:
Figure 4, Relative abundance of transcripts for sulfide quinone reductase (SQR) type I (putatively involved in anoxygenic photosynthesis) and type II (putatively involved in sulfide detoxification) genes from the Phormidium MAG, normalized by transcripts recruited to the MAG for each sample.
This figure presents the relative expression of dsrA and rdsrA genes in our MAGs. Let’s take a look at the data sourcing this figure.
| scaffold_anvio | Gene name | WellBinned | MAG | source | Protein | CDS_TPM_sample | Type | Organism |
|---|---|---|---|---|---|---|---|---|
| scaffold_259 | dsrA | well_binned | bin_26 | night | 3300002026_MIS_1000026017 | 0.267 | Reductive (dsrA) | Desulfobacula (bin_26) |
| scaffold_259 | dsrA | well_binned | bin_26 | day | 3300002026_MIS_1000026017 | 0.713 | Reductive (dsrA) | Desulfobacula (bin_26) |
| scaffold_712 | dsrA | well_binned | bin_102 | day | 3300002026_MIS_1000071328 | 0.740 | Reductive (dsrA) | Desulfocapsa (bin_102) |
| scaffold_712 | dsrA | well_binned | bin_102 | day | 3300002026_MIS_1000071328 | 0.599 | Reductive (dsrA) | Desulfocapsa (bin_102) |
| scaffold_712 | dsrA | well_binned | bin_102 | night | 3300002026_MIS_1000071328 | 0.277 | Reductive (dsrA) | Desulfocapsa (bin_102) |
| scaffold_712 | dsrA | well_binned | bin_102 | night | 3300002026_MIS_1000071328 | 0.838 | Reductive (dsrA) | Desulfocapsa (bin_102) |
| scaffold_13184 | dsrA | not_well_binned | bin_204 | day | 3300002026_MIS_100131856 | 8.173 | Reductive (dsrA) | Desulfococcus (bin_204) |
| scaffold_13184 | dsrA | not_well_binned | bin_204 | night | 3300002026_MIS_100131856 | 3.235 | Reductive (dsrA) | Desulfococcus (bin_204) |
| scaffold_13184 | dsrA | not_well_binned | bin_204 | day | 3300002026_MIS_100131856 | 0.368 | Reductive (dsrA) | Desulfococcus (bin_204) |
| scaffold_13184 | dsrA | not_well_binned | bin_204 | night | 3300002026_MIS_100131856 | 2.178 | Reductive (dsrA) | Desulfococcus (bin_204) |
| scaffold_13184 | dsrA | not_well_binned | bin_204 | day | 3300002026_MIS_100131856 | 1.683 | Reductive (dsrA) | Desulfococcus (bin_204) |
| scaffold_19845 | dsrA | well_binned | bin_101 | day | 3300002026_MIS_1001984613 | 0.240 | Reductive (dsrA) | Desulfococcus (bin_101) |
| scaffold_19845 | dsrA | well_binned | bin_101 | day | 3300002026_MIS_1001984613 | 0.582 | Reductive (dsrA) | Desulfococcus (bin_101) |
| scaffold_19845 | dsrA | well_binned | bin_101 | night | 3300002026_MIS_1001984613 | 0.000 | Reductive (dsrA) | Desulfococcus (bin_101) |
| scaffold_40931 | dsrA | not_well_binned | NA | day | 3300002027_MIS_100047982 | 0.479 | Reductive (dsrA) | Desulfobacterales* |
| scaffold_40931 | dsrA | not_well_binned | NA | night | 3300002027_MIS_100047982 | 0.000 | Reductive (dsrA) | Desulfobacterales* |
| scaffold_89345 | dsrA | not_well_binned | NA | night | 3300002027_MIS_100494491 | 0.417 | Reductive (dsrA) | Desulfomicrobium* |
| scaffold_89345 | dsrA | not_well_binned | NA | night | 3300002027_MIS_100494491 | 0.148 | Reductive (dsrA) | Desulfomicrobium* |
| scaffold_89345 | dsrA | not_well_binned | NA | day | 3300002027_MIS_100494491 | 1.788 | Reductive (dsrA) | Desulfomicrobium* |
| scaffold_89345 | dsrA | not_well_binned | NA | night | 3300002027_MIS_100494491 | 0.275 | Reductive (dsrA) | Desulfomicrobium* |
| scaffold_105912 | dsrA | not_well_binned | NA | night | 3300002027_MIS_10065790_merged | 0.151 | Reductive (dsrA) | Desulfobulbaceae* |
| scaffold_105912 | dsrA | not_well_binned | NA | night | 3300002027_MIS_10065790_merged | 0.280 | Reductive (dsrA) | Desulfobulbaceae* |
| scaffold_105912 | dsrA | not_well_binned | NA | day | 3300002027_MIS_10065790_merged | 0.000 | Reductive (dsrA) | Desulfobulbaceae* |
| scaffold_342 | rdsrA | well_binned | bin_151 | night | 3300002026_MIS_1000034311 | 1.091 | Oxidative (rdsrA) | Betaproteobacteria (bin_151) |
| scaffold_342 | rdsrA | well_binned | bin_151 | day | 3300002026_MIS_1000034311 | 0.486 | Oxidative (rdsrA) | Betaproteobacteria (bin_151) |
| scaffold_57215 | rdsrA | not_well_binned | NA | day | 3300002026_MIS_100382858 | 0.251 | Oxidative (rdsrA) | Proteobacteria* |
| scaffold_57215 | rdsrA | not_well_binned | NA | night | 3300002026_MIS_100382858 | 0.000 | Oxidative (rdsrA) | Proteobacteria* |
| scaffold_59288 | rdsrA | not_well_binned | NA | night | 3300002027_MIS_100208275 | 1.093 | Oxidative (rdsrA) | Betaproteobacteria* |
| scaffold_59288 | rdsrA | not_well_binned | NA | day | 3300002027_MIS_100208275 | 0.124 | Oxidative (rdsrA) | Betaproteobacteria* |
| scaffold_87455 | rdsrA | not_well_binned | NA | night | 3300002027_MIS_100475991 | 0.657 | Oxidative (rdsrA) | Thiobacillus* |
| scaffold_87455 | rdsrA | not_well_binned | NA | day | 3300002027_MIS_100475991 | 0.000 | Oxidative (rdsrA) | Thiobacillus* |
| scaffold_758 | rdsrA | well_binned | bin_127 | night | 3300002026_MIS_10000759_merged | 0.809 | Oxidative (rdsrA) | Hydrogenophilales (bin_127) |
| scaffold_758 | rdsrA | well_binned | bin_127 | night | 3300002026_MIS_10000759_merged | 0.204 | Oxidative (rdsrA) | Hydrogenophilales (bin_127) |
| scaffold_758 | rdsrA | well_binned | bin_127 | night | 3300002026_MIS_10000759_merged | 0.145 | Oxidative (rdsrA) | Hydrogenophilales (bin_127) |
| scaffold_758 | rdsrA | well_binned | bin_127 | day | 3300002026_MIS_10000759_merged | 0.000 | Oxidative (rdsrA) | Hydrogenophilales (bin_127) |
| scaffold_263346 | rdsrA | not_well_binned | NA | night | 3300002027_MIS_10188750_merged | 2.370 | Oxidative (rdsrA) | Thiothrix* |
| scaffold_263346 | rdsrA | not_well_binned | NA | day | 3300002027_MIS_10188750_merged | 0.000 | Oxidative (rdsrA) | Thiothrix* |
| scaffold_377213 | rdsrA | not_well_binned | NA | night | 3300002027_MIS_10195876_merged | 0.000 | Oxidative (rdsrA) | Beggiatoa* |
| scaffold_377213 | rdsrA | not_well_binned | NA | day | 3300002027_MIS_10195876_merged | 0.000 | Oxidative (rdsrA) | Beggiatoa* |
Figure 5, Relative abundance of transcripts for key genes for dissimilatory sulfite reduction (dsrA) and reverse dissimilatory sulfite reduction (rdsrA) normalized by total number of sequences in each sample.
This figure presents the relative expression of genes from different autotrophic metabolisms in our MAGs. Let’s take a look at the data sourcing this figure. This table is comparatively large; it has 698 rows and 21 columns.
| MAG | KOCategory | scaffold_anvio | IMGScaffold | gene_id | Protein | Description | Category | Short name | System | source | CDS_TPM_sample | CDS_TPM_bin | time | Organism | Pathway | Label | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199 | Bin_1 | K01601 | scaffold_97311 | 3300002027_MIS_10057292 | MIS_100572921 | 3300002027_MIS_100572921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 17.439 | 611.3 | day | Phormidium | Autotrophy RuBisCo | Phormidium (Bin_1) |
| 200 | Bin_1 | K01601 | scaffold_97311 | 3300002027_MIS_10057292 | MIS_100572921 | 3300002027_MIS_100572921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 231.304 | 2637.5 | night | Phormidium | Autotrophy RuBisCo | Phormidium (Bin_1) |
| 201 | Bin_1 | K01601 | scaffold_97311 | 3300002027_MIS_10057292 | MIS_100572921 | 3300002027_MIS_100572921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 4.266 | 152.3 | night | Phormidium | Autotrophy RuBisCo | Phormidium (Bin_1) |
| 202 | Bin_1 | K01601 | scaffold_97311 | 3300002027_MIS_10057292 | MIS_100572921 | 3300002027_MIS_100572921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 58.263 | 1783.7 | day | Phormidium | Autotrophy RuBisCo | Phormidium (Bin_1) |
| 203 | Bin_1 | K01601 | scaffold_97311 | 3300002027_MIS_10057292 | MIS_100572921 | 3300002027_MIS_100572921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 80.405 | 979.9 | day | Phormidium | Autotrophy RuBisCo | Phormidium (Bin_1) |
| 204 | Bin_1 | K01601 | scaffold_97311 | 3300002027_MIS_10057292 | MIS_100572921 | 3300002027_MIS_100572921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 452.289 | 3229.5 | night | Phormidium | Autotrophy RuBisCo | Phormidium (Bin_1) |
| 205 | bin_235_243 | K01601 | scaffold_46456 | 3300002027_MIS_10009437 | MIS_100094373 | 3300002027_MIS_100094373 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 10.706 | 3469.4 | day | Planktothrix | Autotrophy RuBisCo | Planktothrix (bin_235_243) |
| 206 | bin_235_243 | K01601 | scaffold_46456 | 3300002027_MIS_10009437 | MIS_100094373 | 3300002027_MIS_100094373 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 2.133 | 1903.3 | night | Planktothrix | Autotrophy RuBisCo | Planktothrix (bin_235_243) |
| 207 | bin_235_243 | K01601 | scaffold_46456 | 3300002027_MIS_10009437 | MIS_100094373 | 3300002027_MIS_100094373 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 48.026 | 7853.0 | night | Planktothrix | Autotrophy RuBisCo | Planktothrix (bin_235_243) |
| 208 | bin_235_243 | K01601 | scaffold_46456 | 3300002027_MIS_10009437 | MIS_100094373 | 3300002027_MIS_100094373 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 33.927 | 4565.6 | night | Planktothrix | Autotrophy RuBisCo | Planktothrix (bin_235_243) |
| 209 | bin_235_243 | K01601 | scaffold_46456 | 3300002027_MIS_10009437 | MIS_100094373 | 3300002027_MIS_100094373 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 2.428 | 2062.5 | day | Planktothrix | Autotrophy RuBisCo | Planktothrix (bin_235_243) |
| 210 | bin_235_243 | K01601 | scaffold_46456 | 3300002027_MIS_10009437 | MIS_100094373 | 3300002027_MIS_100094373 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 18.225 | 2313.4 | day | Planktothrix | Autotrophy RuBisCo | Planktothrix (bin_235_243) |
| 211 | bin_143 | K01601 | scaffold_1147 | 3300002026_MIS_10001148 | MIS_1000114837 | 3300002026_MIS_1000114837 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Pseudanabaena | Autotrophy RuBisCo | Pseudanabaena (bin_143) |
| 212 | bin_143 | K01601 | scaffold_1147 | 3300002026_MIS_10001148 | MIS_1000114837 | 3300002026_MIS_1000114837 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 5.490 | 19961.0 | night | Pseudanabaena | Autotrophy RuBisCo | Pseudanabaena (bin_143) |
| 213 | bin_143 | K01601 | scaffold_1147 | 3300002026_MIS_10001148 | MIS_1000114837 | 3300002026_MIS_1000114837 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 1.179 | 1522.1 | day | Pseudanabaena | Autotrophy RuBisCo | Pseudanabaena (bin_143) |
| 214 | bin_143 | K01601 | scaffold_1147 | 3300002026_MIS_10001148 | MIS_1000114837 | 3300002026_MIS_1000114837 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Pseudanabaena | Autotrophy RuBisCo | Pseudanabaena (bin_143) |
| 215 | bin_143 | K01601 | scaffold_1147 | 3300002026_MIS_10001148 | MIS_1000114837 | 3300002026_MIS_1000114837 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Pseudanabaena | Autotrophy RuBisCo | Pseudanabaena (bin_143) |
| 216 | bin_143 | K01601 | scaffold_1147 | 3300002026_MIS_10001148 | MIS_1000114837 | 3300002026_MIS_1000114837 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 5.697 | 1945.1 | night | Pseudanabaena | Autotrophy RuBisCo | Pseudanabaena (bin_143) |
| 217 | bin_256 | K01601 | scaffold_3553 | 3300002026_MIS_10003554 | MIS_1000355412 | 3300002026_MIS_1000355412 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 3.510 | 15784.5 | night | Spirulina | Autotrophy RuBisCo | Spirulina (bin_256) |
| 218 | bin_256 | K01601 | scaffold_3553 | 3300002026_MIS_10003554 | MIS_1000355412 | 3300002026_MIS_1000355412 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Spirulina | Autotrophy RuBisCo | Spirulina (bin_256) |
| 219 | bin_256 | K01601 | scaffold_3553 | 3300002026_MIS_10003554 | MIS_1000355412 | 3300002026_MIS_1000355412 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Spirulina | Autotrophy RuBisCo | Spirulina (bin_256) |
| 220 | bin_256 | K01601 | scaffold_3553 | 3300002026_MIS_10003554 | MIS_1000355412 | 3300002026_MIS_1000355412 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Spirulina | Autotrophy RuBisCo | Spirulina (bin_256) |
| 221 | bin_256 | K01601 | scaffold_3553 | 3300002026_MIS_10003554 | MIS_1000355412 | 3300002026_MIS_1000355412 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 1.329 | 21429.2 | night | Spirulina | Autotrophy RuBisCo | Spirulina (bin_256) |
| 222 | bin_256 | K01601 | scaffold_3553 | 3300002026_MIS_10003554 | MIS_1000355412 | 3300002026_MIS_1000355412 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.457 | 21313.1 | day | Spirulina | Autotrophy RuBisCo | Spirulina (bin_256) |
| 1 | Bin_3_1 | K01601 | scaffold_53144 | 3300002026_MIS_10037879 | MIS_100378791 | 3300002026_MIS_100378791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Bacillariophyte 1 | Autotrophy RuBisCo | Bacillariophyte 1 (Bin_3_1) |
| 2 | Bin_3_1 | K01601 | scaffold_53144 | 3300002026_MIS_10037879 | MIS_100378791 | 3300002026_MIS_100378791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Bacillariophyte 1 | Autotrophy RuBisCo | Bacillariophyte 1 (Bin_3_1) |
| 3 | Bin_3_1 | K01601 | scaffold_53144 | 3300002026_MIS_10037879 | MIS_100378791 | 3300002026_MIS_100378791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.182 | 236.4 | night | Bacillariophyte 1 | Autotrophy RuBisCo | Bacillariophyte 1 (Bin_3_1) |
| 4 | Bin_3_1 | K01601 | scaffold_53144 | 3300002026_MIS_10037879 | MIS_100378791 | 3300002026_MIS_100378791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Bacillariophyte 1 | Autotrophy RuBisCo | Bacillariophyte 1 (Bin_3_1) |
| 5 | Bin_3_1 | K01601 | scaffold_53144 | 3300002026_MIS_10037879 | MIS_100378791 | 3300002026_MIS_100378791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Bacillariophyte 1 | Autotrophy RuBisCo | Bacillariophyte 1 (Bin_3_1) |
| 6 | Bin_3_1 | K01601 | scaffold_53144 | 3300002026_MIS_10037879 | MIS_100378791 | 3300002026_MIS_100378791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Bacillariophyte 1 | Autotrophy RuBisCo | Bacillariophyte 1 (Bin_3_1) |
| 7 | Bin_3_3 | K01601 | scaffold_433 | 3300002026_MIS_10000434 | MIS_1000043450 | 3300002026_MIS_1000043450 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 17.316 | 601.5 | night | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 9 | Bin_3_3 | K01601 | scaffold_433 | 3300002026_MIS_10000434 | MIS_1000043450 | 3300002026_MIS_1000043450 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 3.886 | 415.1 | night | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 11 | Bin_3_3 | K01601 | scaffold_433 | 3300002026_MIS_10000434 | MIS_1000043450 | 3300002026_MIS_1000043450 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 25.400 | 2552.3 | day | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 12 | Bin_3_3 | K01601 | scaffold_433 | 3300002026_MIS_10000434 | MIS_1000043450 | 3300002026_MIS_1000043450 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 37.876 | 2676.5 | night | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 16 | Bin_3_3 | K01601 | scaffold_433 | 3300002026_MIS_10000434 | MIS_1000043450 | 3300002026_MIS_1000043450 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 28.121 | 722.9 | day | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 18 | Bin_3_3 | K01601 | scaffold_433 | 3300002026_MIS_10000434 | MIS_1000043450 | 3300002026_MIS_1000043450 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 13.725 | 769.3 | day | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 8 | Bin_3_3 | K01601 | scaffold_102 | 3300002026_MIS_10000103 | MIS_1000010385 | 3300002026_MIS_1000010385 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 10 | Bin_3_3 | K01601 | scaffold_102 | 3300002026_MIS_10000103 | MIS_1000010385 | 3300002026_MIS_1000010385 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.962 | 33.4 | night | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 13 | Bin_3_3 | K01601 | scaffold_102 | 3300002026_MIS_10000103 | MIS_1000010385 | 3300002026_MIS_1000010385 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.182 | 12.9 | night | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 14 | Bin_3_3 | K01601 | scaffold_102 | 3300002026_MIS_10000103 | MIS_1000010385 | 3300002026_MIS_1000010385 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 15 | Bin_3_3 | K01601 | scaffold_102 | 3300002026_MIS_10000103 | MIS_1000010385 | 3300002026_MIS_1000010385 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 17 | Bin_3_3 | K01601 | scaffold_102 | 3300002026_MIS_10000103 | MIS_1000010385 | 3300002026_MIS_1000010385 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Bacillariophyte 2 | Autotrophy RuBisCo | Bacillariophyte 2 (Bin_3_3) |
| 85 | bin_91 | K01601 | scaffold_26178 | 3300002026_MIS_10026179 | MIS_100261791 | 3300002026_MIS_100261791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_91) |
| 86 | bin_91 | K01601 | scaffold_26178 | 3300002026_MIS_10026179 | MIS_100261791 | 3300002026_MIS_100261791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_91) |
| 87 | bin_91 | K01601 | scaffold_26178 | 3300002026_MIS_10026179 | MIS_100261791 | 3300002026_MIS_100261791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_91) |
| 88 | bin_91 | K01601 | scaffold_26178 | 3300002026_MIS_10026179 | MIS_100261791 | 3300002026_MIS_100261791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_91) |
| 89 | bin_91 | K01601 | scaffold_26178 | 3300002026_MIS_10026179 | MIS_100261791 | 3300002026_MIS_100261791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_91) |
| 90 | bin_91 | K01601 | scaffold_26178 | 3300002026_MIS_10026179 | MIS_100261791 | 3300002026_MIS_100261791 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_91) |
| 115 | bin_127 | K01601 | scaffold_5013 | 3300002026_MIS_10005014 | MIS_1000501414 | 3300002026_MIS_1000501414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_127) |
| 116 | bin_127 | K01601 | scaffold_5013 | 3300002026_MIS_10005014 | MIS_1000501414 | 3300002026_MIS_1000501414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_127) |
| 117 | bin_127 | K01601 | scaffold_5013 | 3300002026_MIS_10005014 | MIS_1000501414 | 3300002026_MIS_1000501414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_127) |
| 118 | bin_127 | K01601 | scaffold_5013 | 3300002026_MIS_10005014 | MIS_1000501414 | 3300002026_MIS_1000501414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_127) |
| 119 | bin_127 | K01601 | scaffold_5013 | 3300002026_MIS_10005014 | MIS_1000501414 | 3300002026_MIS_1000501414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_127) |
| 120 | bin_127 | K01601 | scaffold_5013 | 3300002026_MIS_10005014 | MIS_1000501414 | 3300002026_MIS_1000501414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_127) |
| 121 | bin_151 | K01601 | scaffold_26151 | 3300002026_MIS_10026152 | MIS_100261524 | 3300002026_MIS_100261524 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 122 | bin_151 | K01601 | scaffold_26151 | 3300002026_MIS_10026152 | MIS_100261524 | 3300002026_MIS_100261524 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 127 | bin_151 | K01601 | scaffold_26151 | 3300002026_MIS_10026152 | MIS_100261524 | 3300002026_MIS_100261524 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 131 | bin_151 | K01601 | scaffold_26151 | 3300002026_MIS_10026152 | MIS_100261524 | 3300002026_MIS_100261524 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 135 | bin_151 | K01601 | scaffold_26151 | 3300002026_MIS_10026152 | MIS_100261524 | 3300002026_MIS_100261524 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 139 | bin_151 | K01601 | scaffold_26151 | 3300002026_MIS_10026152 | MIS_100261524 | 3300002026_MIS_100261524 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 123 | bin_151 | K01601 | scaffold_5815 | 3300002026_MIS_10005816 | MIS_100058161 | 3300002026_MIS_100058161 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 124 | bin_151 | K01601 | scaffold_5815 | 3300002026_MIS_10005816 | MIS_100058161 | 3300002026_MIS_100058161 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 126 | bin_151 | K01601 | scaffold_5815 | 3300002026_MIS_10005816 | MIS_100058161 | 3300002026_MIS_100058161 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.366 | 5950.1 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 132 | bin_151 | K01601 | scaffold_5815 | 3300002026_MIS_10005816 | MIS_100058161 | 3300002026_MIS_100058161 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 133 | bin_151 | K01601 | scaffold_5815 | 3300002026_MIS_10005816 | MIS_100058161 | 3300002026_MIS_100058161 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 134 | bin_151 | K01601 | scaffold_5815 | 3300002026_MIS_10005816 | MIS_100058161 | 3300002026_MIS_100058161 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.277 | 4332.9 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 125 | bin_151 | K01601 | scaffold_11727 | 3300002026_MIS_10011728 | MIS_1001172810 | 3300002026_MIS_1001172810 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 128 | bin_151 | K01601 | scaffold_11727 | 3300002026_MIS_10011728 | MIS_1001172810 | 3300002026_MIS_1001172810 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 129 | bin_151 | K01601 | scaffold_11727 | 3300002026_MIS_10011728 | MIS_1001172810 | 3300002026_MIS_1001172810 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 136 | bin_151 | K01601 | scaffold_11727 | 3300002026_MIS_10011728 | MIS_1001172810 | 3300002026_MIS_1001172810 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 137 | bin_151 | K01601 | scaffold_11727 | 3300002026_MIS_10011728 | MIS_1001172810 | 3300002026_MIS_1001172810 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.450 | 7050.5 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 140 | bin_151 | K01601 | scaffold_11727 | 3300002026_MIS_10011728 | MIS_1001172810 | 3300002026_MIS_1001172810 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 130 | bin_151 | K01601 | scaffold_26191 | 3300002026_MIS_10026192 | MIS_100261921 | 3300002026_MIS_100261921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 138 | bin_151 | K01601 | scaffold_26191 | 3300002026_MIS_10026192 | MIS_100261921 | 3300002026_MIS_100261921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 141 | bin_151 | K01601 | scaffold_26191 | 3300002026_MIS_10026192 | MIS_100261921 | 3300002026_MIS_100261921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 142 | bin_151 | K01601 | scaffold_26191 | 3300002026_MIS_10026192 | MIS_100261921 | 3300002026_MIS_100261921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 143 | bin_151 | K01601 | scaffold_26191 | 3300002026_MIS_10026192 | MIS_100261921 | 3300002026_MIS_100261921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 144 | bin_151 | K01601 | scaffold_26191 | 3300002026_MIS_10026192 | MIS_100261921 | 3300002026_MIS_100261921 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria | Autotrophy RuBisCo | Betaproteobacteria (bin_151) |
| 109 | bin_122 | K01601 | scaffold_4035 | 3300002026_MIS_10004036 | MIS_1000403617 | 3300002026_MIS_1000403617 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria;Candidatus Accumulibacter | Autotrophy RuBisCo | Betaproteobacteria;Candidatus Accumulibacter (bin_122) |
| 110 | bin_122 | K01601 | scaffold_4035 | 3300002026_MIS_10004036 | MIS_1000403617 | 3300002026_MIS_1000403617 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria;Candidatus Accumulibacter | Autotrophy RuBisCo | Betaproteobacteria;Candidatus Accumulibacter (bin_122) |
| 111 | bin_122 | K01601 | scaffold_4035 | 3300002026_MIS_10004036 | MIS_1000403617 | 3300002026_MIS_1000403617 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria;Candidatus Accumulibacter | Autotrophy RuBisCo | Betaproteobacteria;Candidatus Accumulibacter (bin_122) |
| 112 | bin_122 | K01601 | scaffold_4035 | 3300002026_MIS_10004036 | MIS_1000403617 | 3300002026_MIS_1000403617 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria;Candidatus Accumulibacter | Autotrophy RuBisCo | Betaproteobacteria;Candidatus Accumulibacter (bin_122) |
| 113 | bin_122 | K01601 | scaffold_4035 | 3300002026_MIS_10004036 | MIS_1000403617 | 3300002026_MIS_1000403617 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Candidatus Accumulibacter | Autotrophy RuBisCo | Betaproteobacteria;Candidatus Accumulibacter (bin_122) |
| 114 | bin_122 | K01601 | scaffold_4035 | 3300002026_MIS_10004036 | MIS_1000403617 | 3300002026_MIS_1000403617 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria;Candidatus Accumulibacter | Autotrophy RuBisCo | Betaproteobacteria;Candidatus Accumulibacter (bin_122) |
| 25 | Bin_4_4-contigs | K01601 | scaffold_2547 | 3300002026_MIS_10002548 | MIS_1000254814 | 3300002026_MIS_1000254814 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs) |
| 26 | Bin_4_4-contigs | K01601 | scaffold_2547 | 3300002026_MIS_10002548 | MIS_1000254814 | 3300002026_MIS_1000254814 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs) |
| 27 | Bin_4_4-contigs | K01601 | scaffold_2547 | 3300002026_MIS_10002548 | MIS_1000254814 | 3300002026_MIS_1000254814 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs) |
| 28 | Bin_4_4-contigs | K01601 | scaffold_2547 | 3300002026_MIS_10002548 | MIS_1000254814 | 3300002026_MIS_1000254814 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.117 | 164.8 | day | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs) |
| 29 | Bin_4_4-contigs | K01601 | scaffold_2547 | 3300002026_MIS_10002548 | MIS_1000254814 | 3300002026_MIS_1000254814 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs) |
| 30 | Bin_4_4-contigs | K01601 | scaffold_2547 | 3300002026_MIS_10002548 | MIS_1000254814 | 3300002026_MIS_1000254814 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs) |
| 73 | bin_70 | K01601 | scaffold_2694 | 3300002026_MIS_10002695 | MIS_100026955 | 3300002026_MIS_100026955 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.556 | 869.8 | day | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (bin_70) |
| 74 | bin_70 | K01601 | scaffold_2694 | 3300002026_MIS_10002695 | MIS_100026955 | 3300002026_MIS_100026955 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (bin_70) |
| 75 | bin_70 | K01601 | scaffold_2694 | 3300002026_MIS_10002695 | MIS_100026955 | 3300002026_MIS_100026955 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (bin_70) |
| 76 | bin_70 | K01601 | scaffold_2694 | 3300002026_MIS_10002695 | MIS_100026955 | 3300002026_MIS_100026955 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (bin_70) |
| 77 | bin_70 | K01601 | scaffold_2694 | 3300002026_MIS_10002695 | MIS_100026955 | 3300002026_MIS_100026955 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (bin_70) |
| 78 | bin_70 | K01601 | scaffold_2694 | 3300002026_MIS_10002695 | MIS_100026955 | 3300002026_MIS_100026955 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria;Hydrogenophaga | Autotrophy RuBisCo | Betaproteobacteria;Hydrogenophaga (bin_70) |
| 49 | bin_38 | K01601 | scaffold_31017 | 3300002026_MIS_10031018 | MIS_100310181 | 3300002026_MIS_100310181 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_38) |
| 50 | bin_38 | K01601 | scaffold_31017 | 3300002026_MIS_10031018 | MIS_100310181 | 3300002026_MIS_100310181 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_38) |
| 51 | bin_38 | K01601 | scaffold_31017 | 3300002026_MIS_10031018 | MIS_100310181 | 3300002026_MIS_100310181 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_38) |
| 52 | bin_38 | K01601 | scaffold_31017 | 3300002026_MIS_10031018 | MIS_100310181 | 3300002026_MIS_100310181 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_38) |
| 53 | bin_38 | K01601 | scaffold_31017 | 3300002026_MIS_10031018 | MIS_100310181 | 3300002026_MIS_100310181 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.287 | 10107.8 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_38) |
| 54 | bin_38 | K01601 | scaffold_31017 | 3300002026_MIS_10031018 | MIS_100310181 | 3300002026_MIS_100310181 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_38) |
| 55 | bin_44 | K01601 | scaffold_4459 | 3300002026_MIS_10004460 | MIS_100044604 | 3300002026_MIS_100044604 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_44) |
| 56 | bin_44 | K01601 | scaffold_4459 | 3300002026_MIS_10004460 | MIS_100044604 | 3300002026_MIS_100044604 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.582 | 26060.1 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_44) |
| 57 | bin_44 | K01601 | scaffold_4459 | 3300002026_MIS_10004460 | MIS_100044604 | 3300002026_MIS_100044604 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_44) |
| 58 | bin_44 | K01601 | scaffold_4459 | 3300002026_MIS_10004460 | MIS_100044604 | 3300002026_MIS_100044604 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_44) |
| 59 | bin_44 | K01601 | scaffold_4459 | 3300002026_MIS_10004460 | MIS_100044604 | 3300002026_MIS_100044604 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.555 | 43462.7 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_44) |
| 60 | bin_44 | K01601 | scaffold_4459 | 3300002026_MIS_10004460 | MIS_100044604 | 3300002026_MIS_100044604 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_44) |
| 61 | bin_46 | K01601 | scaffold_25826 | 3300002026_MIS_10025827 | MIS_100258271 | 3300002026_MIS_100258271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 62 | bin_46 | K01601 | scaffold_25826 | 3300002026_MIS_10025827 | MIS_100258271 | 3300002026_MIS_100258271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 63 | bin_46 | K01601 | scaffold_25826 | 3300002026_MIS_10025827 | MIS_100258271 | 3300002026_MIS_100258271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.414 | 5234.7 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 68 | bin_46 | K01601 | scaffold_25826 | 3300002026_MIS_10025827 | MIS_100258271 | 3300002026_MIS_100258271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 69 | bin_46 | K01601 | scaffold_25826 | 3300002026_MIS_10025827 | MIS_100258271 | 3300002026_MIS_100258271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 72 | bin_46 | K01601 | scaffold_25826 | 3300002026_MIS_10025827 | MIS_100258271 | 3300002026_MIS_100258271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 64 | bin_46 | K01601 | scaffold_10359 | 3300002026_MIS_10010360 | MIS_1001036013 | 3300002026_MIS_1001036013 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 65 | bin_46 | K01601 | scaffold_10359 | 3300002026_MIS_10010360 | MIS_1001036013 | 3300002026_MIS_1001036013 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 66 | bin_46 | K01601 | scaffold_10359 | 3300002026_MIS_10010360 | MIS_1001036013 | 3300002026_MIS_1001036013 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 67 | bin_46 | K01601 | scaffold_10359 | 3300002026_MIS_10010360 | MIS_1001036013 | 3300002026_MIS_1001036013 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 70 | bin_46 | K01601 | scaffold_10359 | 3300002026_MIS_10010360 | MIS_1001036013 | 3300002026_MIS_1001036013 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 71 | bin_46 | K01601 | scaffold_10359 | 3300002026_MIS_10010360 | MIS_1001036013 | 3300002026_MIS_1001036013 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria;Rhodoferax | Autotrophy RuBisCo | Betaproteobacteria;Rhodoferax (bin_46) |
| 19 | Bin_4_3_4-contigs | K01601 | scaffold_10257 | 3300002026_MIS_10010258 | MIS_100102587 | 3300002026_MIS_100102587 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Betaproteobacteria;Sulfuritalea | Autotrophy RuBisCo | Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs) |
| 20 | Bin_4_3_4-contigs | K01601 | scaffold_10257 | 3300002026_MIS_10010258 | MIS_100102587 | 3300002026_MIS_100102587 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Betaproteobacteria;Sulfuritalea | Autotrophy RuBisCo | Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs) |
| 21 | Bin_4_3_4-contigs | K01601 | scaffold_10257 | 3300002026_MIS_10010258 | MIS_100102587 | 3300002026_MIS_100102587 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Betaproteobacteria;Sulfuritalea | Autotrophy RuBisCo | Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs) |
| 22 | Bin_4_3_4-contigs | K01601 | scaffold_10257 | 3300002026_MIS_10010258 | MIS_100102587 | 3300002026_MIS_100102587 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Betaproteobacteria;Sulfuritalea | Autotrophy RuBisCo | Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs) |
| 23 | Bin_4_3_4-contigs | K01601 | scaffold_10257 | 3300002026_MIS_10010258 | MIS_100102587 | 3300002026_MIS_100102587 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | Betaproteobacteria;Sulfuritalea | Autotrophy RuBisCo | Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs) |
| 24 | Bin_4_3_4-contigs | K01601 | scaffold_10257 | 3300002026_MIS_10010258 | MIS_100102587 | 3300002026_MIS_100102587 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Betaproteobacteria;Sulfuritalea | Autotrophy RuBisCo | Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs) |
| 157 | bin_179 | K01601 | scaffold_33250 | 3300002026_MIS_10033251 | MIS_100332512 | 3300002026_MIS_100332512 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | Chloroflexi;Anaerolinea | Autotrophy RuBisCo | Chloroflexi;Anaerolinea (bin_179) |
| 158 | bin_179 | K01601 | scaffold_33250 | 3300002026_MIS_10033251 | MIS_100332512 | 3300002026_MIS_100332512 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Chloroflexi;Anaerolinea | Autotrophy RuBisCo | Chloroflexi;Anaerolinea (bin_179) |
| 159 | bin_179 | K01601 | scaffold_33250 | 3300002026_MIS_10033251 | MIS_100332512 | 3300002026_MIS_100332512 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Chloroflexi;Anaerolinea | Autotrophy RuBisCo | Chloroflexi;Anaerolinea (bin_179) |
| 160 | bin_179 | K01601 | scaffold_33250 | 3300002026_MIS_10033251 | MIS_100332512 | 3300002026_MIS_100332512 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Chloroflexi;Anaerolinea | Autotrophy RuBisCo | Chloroflexi;Anaerolinea (bin_179) |
| 161 | bin_179 | K01601 | scaffold_33250 | 3300002026_MIS_10033251 | MIS_100332512 | 3300002026_MIS_100332512 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.167 | 207709.8 | night | Chloroflexi;Anaerolinea | Autotrophy RuBisCo | Chloroflexi;Anaerolinea (bin_179) |
| 162 | bin_179 | K01601 | scaffold_33250 | 3300002026_MIS_10033251 | MIS_100332512 | 3300002026_MIS_100332512 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Chloroflexi;Anaerolinea | Autotrophy RuBisCo | Chloroflexi;Anaerolinea (bin_179) |
| 79 | bin_83 | K14138 | scaffold_14872 | 3300002026_MIS_10014873 | MIS_100148732 | 3300002026_MIS_100148732 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 3.118 | 4248.7 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_83) |
| 80 | bin_83 | K14138 | scaffold_14872 | 3300002026_MIS_10014873 | MIS_100148732 | 3300002026_MIS_100148732 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_83) |
| 81 | bin_83 | K14138 | scaffold_14872 | 3300002026_MIS_10014873 | MIS_100148732 | 3300002026_MIS_100148732 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.345 | 3247.8 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_83) |
| 82 | bin_83 | K14138 | scaffold_14872 | 3300002026_MIS_10014873 | MIS_100148732 | 3300002026_MIS_100148732 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.571 | 13375.9 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_83) |
| 83 | bin_83 | K14138 | scaffold_14872 | 3300002026_MIS_10014873 | MIS_100148732 | 3300002026_MIS_100148732 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_83) |
| 84 | bin_83 | K14138 | scaffold_14872 | 3300002026_MIS_10014873 | MIS_100148732 | 3300002026_MIS_100148732 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_83) |
| 91 | bin_101 | K14138 | scaffold_9940 | 3300002026_MIS_10009941 | MIS_100099411 | 3300002026_MIS_100099411 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 92 | bin_101 | K14138 | scaffold_9940 | 3300002026_MIS_10009941 | MIS_100099411 | 3300002026_MIS_100099411 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 93 | bin_101 | K14138 | scaffold_9940 | 3300002026_MIS_10009941 | MIS_100099411 | 3300002026_MIS_100099411 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 95 | bin_101 | K14138 | scaffold_9940 | 3300002026_MIS_10009941 | MIS_100099411 | 3300002026_MIS_100099411 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.389 | 2228.8 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 96 | bin_101 | K14138 | scaffold_9940 | 3300002026_MIS_10009941 | MIS_100099411 | 3300002026_MIS_100099411 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 100 | bin_101 | K14138 | scaffold_9940 | 3300002026_MIS_10009941 | MIS_100099411 | 3300002026_MIS_100099411 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 94 | bin_101 | K14138 | scaffold_5805 | 3300002026_MIS_10005806 | MIS_1000580617 | 3300002026_MIS_1000580617 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 97 | bin_101 | K14138 | scaffold_5805 | 3300002026_MIS_10005806 | MIS_1000580617 | 3300002026_MIS_1000580617 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 98 | bin_101 | K14138 | scaffold_5805 | 3300002026_MIS_10005806 | MIS_1000580617 | 3300002026_MIS_1000580617 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 99 | bin_101 | K14138 | scaffold_5805 | 3300002026_MIS_10005806 | MIS_1000580617 | 3300002026_MIS_1000580617 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 101 | bin_101 | K14138 | scaffold_5805 | 3300002026_MIS_10005806 | MIS_1000580617 | 3300002026_MIS_1000580617 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 102 | bin_101 | K14138 | scaffold_5805 | 3300002026_MIS_10005806 | MIS_1000580617 | 3300002026_MIS_1000580617 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_101) |
| 169 | bin_204 | K14138 | scaffold_18420 | 3300002026_MIS_10018421 | MIS_100184213 | 3300002026_MIS_100184213 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_204) |
| 170 | bin_204 | K14138 | scaffold_18420 | 3300002026_MIS_10018421 | MIS_100184213 | 3300002026_MIS_100184213 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 1.569 | 8304.1 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_204) |
| 171 | bin_204 | K14138 | scaffold_18420 | 3300002026_MIS_10018421 | MIS_100184213 | 3300002026_MIS_100184213 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 1.920 | 6825.1 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_204) |
| 172 | bin_204 | K14138 | scaffold_18420 | 3300002026_MIS_10018421 | MIS_100184213 | 3300002026_MIS_100184213 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 1.637 | 6490.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_204) |
| 173 | bin_204 | K14138 | scaffold_18420 | 3300002026_MIS_10018421 | MIS_100184213 | 3300002026_MIS_100184213 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_204) |
| 174 | bin_204 | K14138 | scaffold_18420 | 3300002026_MIS_10018421 | MIS_100184213 | 3300002026_MIS_100184213 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 7.622 | 18544.9 | day | Deltaproteobacteria;Desulfobacteraceae | Autotrophy WLP | Deltaproteobacteria;Desulfobacteraceae (bin_204) |
| 31 | bin_26 | K14138 | scaffold_2091 | 3300002026_MIS_10002092 | MIS_100020921 | 3300002026_MIS_100020921 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.197 | 15600.7 | night | Deltaproteobacteria;Desulfobacula | Autotrophy WLP | Deltaproteobacteria;Desulfobacula (bin_26) |
| 32 | bin_26 | K14138 | scaffold_2091 | 3300002026_MIS_10002092 | MIS_100020921 | 3300002026_MIS_100020921 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacula | Autotrophy WLP | Deltaproteobacteria;Desulfobacula (bin_26) |
| 33 | bin_26 | K14138 | scaffold_2091 | 3300002026_MIS_10002092 | MIS_100020921 | 3300002026_MIS_100020921 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.792 | 28010.7 | day | Deltaproteobacteria;Desulfobacula | Autotrophy WLP | Deltaproteobacteria;Desulfobacula (bin_26) |
| 34 | bin_26 | K14138 | scaffold_2091 | 3300002026_MIS_10002092 | MIS_100020921 | 3300002026_MIS_100020921 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacula | Autotrophy WLP | Deltaproteobacteria;Desulfobacula (bin_26) |
| 35 | bin_26 | K14138 | scaffold_2091 | 3300002026_MIS_10002092 | MIS_100020921 | 3300002026_MIS_100020921 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobacula | Autotrophy WLP | Deltaproteobacteria;Desulfobacula (bin_26) |
| 36 | bin_26 | K14138 | scaffold_2091 | 3300002026_MIS_10002092 | MIS_100020921 | 3300002026_MIS_100020921 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobacula | Autotrophy WLP | Deltaproteobacteria;Desulfobacula (bin_26) |
| 103 | bin_102 | K14138 | scaffold_4017 | 3300002026_MIS_10004018 | MIS_100040189 | 3300002026_MIS_100040189 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobulbaceae | Autotrophy WLP | Deltaproteobacteria;Desulfobulbaceae (bin_102) |
| 104 | bin_102 | K14138 | scaffold_4017 | 3300002026_MIS_10004018 | MIS_100040189 | 3300002026_MIS_100040189 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobulbaceae | Autotrophy WLP | Deltaproteobacteria;Desulfobulbaceae (bin_102) |
| 105 | bin_102 | K14138 | scaffold_4017 | 3300002026_MIS_10004018 | MIS_100040189 | 3300002026_MIS_100040189 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobulbaceae | Autotrophy WLP | Deltaproteobacteria;Desulfobulbaceae (bin_102) |
| 106 | bin_102 | K14138 | scaffold_4017 | 3300002026_MIS_10004018 | MIS_100040189 | 3300002026_MIS_100040189 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.346 | 4424.0 | day | Deltaproteobacteria;Desulfobulbaceae | Autotrophy WLP | Deltaproteobacteria;Desulfobulbaceae (bin_102) |
| 107 | bin_102 | K14138 | scaffold_4017 | 3300002026_MIS_10004018 | MIS_100040189 | 3300002026_MIS_100040189 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Deltaproteobacteria;Desulfobulbaceae | Autotrophy WLP | Deltaproteobacteria;Desulfobulbaceae (bin_102) |
| 108 | bin_102 | K14138 | scaffold_4017 | 3300002026_MIS_10004018 | MIS_100040189 | 3300002026_MIS_100040189 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Deltaproteobacteria;Desulfobulbaceae | Autotrophy WLP | Deltaproteobacteria;Desulfobulbaceae (bin_102) |
| 37 | bin_35 | K01601 | scaffold_81988 | 3300002026_MIS_10039712 | MIS_100397121 | 3300002026_MIS_100397121 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 40 | bin_35 | K01601 | scaffold_81988 | 3300002026_MIS_10039712 | MIS_100397121 | 3300002026_MIS_100397121 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 43 | bin_35 | K01601 | scaffold_81988 | 3300002026_MIS_10039712 | MIS_100397121 | 3300002026_MIS_100397121 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 6.500 | 11500.8 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 45 | bin_35 | K01601 | scaffold_81988 | 3300002026_MIS_10039712 | MIS_100397121 | 3300002026_MIS_100397121 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 46 | bin_35 | K01601 | scaffold_81988 | 3300002026_MIS_10039712 | MIS_100397121 | 3300002026_MIS_100397121 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 9.383 | 49736.1 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 48 | bin_35 | K01601 | scaffold_81988 | 3300002026_MIS_10039712 | MIS_100397121 | 3300002026_MIS_100397121 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 38 | bin_35 | K01601 | scaffold_9977 | 3300002026_MIS_10009978 | MIS_100099783 | 3300002026_MIS_100099783 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 39 | bin_35 | K01601 | scaffold_9977 | 3300002026_MIS_10009978 | MIS_100099783 | 3300002026_MIS_100099783 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 41 | bin_35 | K01601 | scaffold_9977 | 3300002026_MIS_10009978 | MIS_100099783 | 3300002026_MIS_100099783 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.352 | 623.7 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 42 | bin_35 | K01601 | scaffold_9977 | 3300002026_MIS_10009978 | MIS_100099783 | 3300002026_MIS_100099783 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.190 | 2277.3 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 44 | bin_35 | K01601 | scaffold_9977 | 3300002026_MIS_10009978 | MIS_100099783 | 3300002026_MIS_100099783 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 47 | bin_35 | K01601 | scaffold_9977 | 3300002026_MIS_10009978 | MIS_100099783 | 3300002026_MIS_100099783 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_35) |
| 163 | bin_188 | K01601 | scaffold_11622 | 3300002026_MIS_10011623 | MIS_1001162314 | 3300002026_MIS_1001162314 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 4.611 | 17593.5 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_188) |
| 164 | bin_188 | K01601 | scaffold_11622 | 3300002026_MIS_10011623 | MIS_1001162314 | 3300002026_MIS_1001162314 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_188) |
| 165 | bin_188 | K01601 | scaffold_11622 | 3300002026_MIS_10011623 | MIS_1001162314 | 3300002026_MIS_1001162314 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_188) |
| 166 | bin_188 | K01601 | scaffold_11622 | 3300002026_MIS_10011623 | MIS_1001162314 | 3300002026_MIS_1001162314 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 1.142 | 23991.4 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_188) |
| 167 | bin_188 | K01601 | scaffold_11622 | 3300002026_MIS_10011623 | MIS_1001162314 | 3300002026_MIS_1001162314 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 2.621 | 46227.8 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_188) |
| 168 | bin_188 | K01601 | scaffold_11622 | 3300002026_MIS_10011623 | MIS_1001162314 | 3300002026_MIS_1001162314 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 1.939 | 41680.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_188) |
| 175 | bin_234 | K01601 | scaffold_33340 | 3300002026_MIS_10033341 | MIS_100333411 | 3300002026_MIS_100333411 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 176 | bin_234 | K01601 | scaffold_33340 | 3300002026_MIS_10033341 | MIS_100333411 | 3300002026_MIS_100333411 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 177 | bin_234 | K01601 | scaffold_33340 | 3300002026_MIS_10033341 | MIS_100333411 | 3300002026_MIS_100333411 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 182 | bin_234 | K01601 | scaffold_33340 | 3300002026_MIS_10033341 | MIS_100333411 | 3300002026_MIS_100333411 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 184 | bin_234 | K01601 | scaffold_33340 | 3300002026_MIS_10033341 | MIS_100333411 | 3300002026_MIS_100333411 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 186 | bin_234 | K01601 | scaffold_33340 | 3300002026_MIS_10033341 | MIS_100333411 | 3300002026_MIS_100333411 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 178 | bin_234 | K01601 | scaffold_23905 | 3300002026_MIS_10023906 | MIS_100239066 | 3300002026_MIS_100239066 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 179 | bin_234 | K01601 | scaffold_23905 | 3300002026_MIS_10023906 | MIS_100239066 | 3300002026_MIS_100239066 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 180 | bin_234 | K01601 | scaffold_23905 | 3300002026_MIS_10023906 | MIS_100239066 | 3300002026_MIS_100239066 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 181 | bin_234 | K01601 | scaffold_23905 | 3300002026_MIS_10023906 | MIS_100239066 | 3300002026_MIS_100239066 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 183 | bin_234 | K01601 | scaffold_23905 | 3300002026_MIS_10023906 | MIS_100239066 | 3300002026_MIS_100239066 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 185 | bin_234 | K01601 | scaffold_23905 | 3300002026_MIS_10023906 | MIS_100239066 | 3300002026_MIS_100239066 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_234) |
| 187 | bin_247 | K01601 | scaffold_22140 | 3300002026_MIS_10022141 | MIS_100221414 | 3300002026_MIS_100221414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 191 | bin_247 | K01601 | scaffold_22140 | 3300002026_MIS_10022141 | MIS_100221414 | 3300002026_MIS_100221414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 193 | bin_247 | K01601 | scaffold_22140 | 3300002026_MIS_10022141 | MIS_100221414 | 3300002026_MIS_100221414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 194 | bin_247 | K01601 | scaffold_22140 | 3300002026_MIS_10022141 | MIS_100221414 | 3300002026_MIS_100221414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 197 | bin_247 | K01601 | scaffold_22140 | 3300002026_MIS_10022141 | MIS_100221414 | 3300002026_MIS_100221414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 198 | bin_247 | K01601 | scaffold_22140 | 3300002026_MIS_10022141 | MIS_100221414 | 3300002026_MIS_100221414 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 188 | bin_247 | K01601 | scaffold_14809 | 3300002026_MIS_10014810 | MIS_100148108 | 3300002026_MIS_100148108 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 189 | bin_247 | K01601 | scaffold_14809 | 3300002026_MIS_10014810 | MIS_100148108 | 3300002026_MIS_100148108 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 190 | bin_247 | K01601 | scaffold_14809 | 3300002026_MIS_10014810 | MIS_100148108 | 3300002026_MIS_100148108 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 192 | bin_247 | K01601 | scaffold_14809 | 3300002026_MIS_10014810 | MIS_100148108 | 3300002026_MIS_100148108 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 195 | bin_247 | K01601 | scaffold_14809 | 3300002026_MIS_10014810 | MIS_100148108 | 3300002026_MIS_100148108 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 196 | bin_247 | K01601 | scaffold_14809 | 3300002026_MIS_10014810 | MIS_100148108 | 3300002026_MIS_100148108 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Gammaproteobacteria;Thioploca | Autotrophy RuBisCo | Gammaproteobacteria;Thioploca (bin_247) |
| 145 | bin_158 | K01601 | scaffold_9405 | 3300002026_MIS_10009406 | MIS_100094068 | 3300002026_MIS_100094068 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 146 | bin_158 | K01601 | scaffold_9405 | 3300002026_MIS_10009406 | MIS_100094068 | 3300002026_MIS_100094068 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.113 | 42970.2 | day | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 147 | bin_158 | K01601 | scaffold_9405 | 3300002026_MIS_10009406 | MIS_100094068 | 3300002026_MIS_100094068 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.403 | 345047.7 | night | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 154 | bin_158 | K01601 | scaffold_9405 | 3300002026_MIS_10009406 | MIS_100094068 | 3300002026_MIS_100094068 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.189 | 6526.5 | night | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 155 | bin_158 | K01601 | scaffold_9405 | 3300002026_MIS_10009406 | MIS_100094068 | 3300002026_MIS_100094068 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.996 | 51770.2 | night | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 156 | bin_158 | K01601 | scaffold_9405 | 3300002026_MIS_10009406 | MIS_100094068 | 3300002026_MIS_100094068 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 148 | bin_158 | K01601 | scaffold_25649 | 3300002026_MIS_10025650 | MIS_100256501 | 3300002026_MIS_100256501 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | 0.0 | day | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 149 | bin_158 | K01601 | scaffold_25649 | 3300002026_MIS_10025650 | MIS_100256501 | 3300002026_MIS_100256501 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | 0.0 | day | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 150 | bin_158 | K01601 | scaffold_25649 | 3300002026_MIS_10025650 | MIS_100256501 | 3300002026_MIS_100256501 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | 0.0 | night | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 151 | bin_158 | K01601 | scaffold_25649 | 3300002026_MIS_10025650 | MIS_100256501 | 3300002026_MIS_100256501 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | 0.0 | night | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 152 | bin_158 | K01601 | scaffold_25649 | 3300002026_MIS_10025650 | MIS_100256501 | 3300002026_MIS_100256501 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | 0.0 | day | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 153 | bin_158 | K01601 | scaffold_25649 | 3300002026_MIS_10025650 | MIS_100256501 | 3300002026_MIS_100256501 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | 0.0 | night | Gammaproteobacteria;Thiotrichaceae | Autotrophy RuBisCo | Gammaproteobacteria;Thiotrichaceae (bin_158) |
| 223 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239610 | 3300002026_MIS_1001239610 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 224 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239610 | 3300002026_MIS_1001239610 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 225 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239610 | 3300002026_MIS_1001239610 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 343 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239610 | 3300002026_MIS_1001239610 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 456 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239610 | 3300002026_MIS_1001239610 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.249 | NA | night | NA | Autotrophy RuBisCo | NA |
| 457 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239610 | 3300002026_MIS_1001239610 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.113 | NA | day | NA | Autotrophy RuBisCo | NA |
| 226 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239619 | 3300002026_MIS_1001239619 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 227 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239619 | 3300002026_MIS_1001239619 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 344 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239619 | 3300002026_MIS_1001239619 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 345 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239619 | 3300002026_MIS_1001239619 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 346 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239619 | 3300002026_MIS_1001239619 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 464 | NA | K01601 | scaffold_12395 | 3300002026_MIS_10012396 | MIS_1001239619 | 3300002026_MIS_1001239619 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 228 | NA | K01601 | scaffold_126315 | 3300002027_MIS_10086049 | MIS_100860492 | 3300002027_MIS_100860492 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 229 | NA | K01601 | scaffold_126315 | 3300002027_MIS_10086049 | MIS_100860492 | 3300002027_MIS_100860492 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 230 | NA | K01601 | scaffold_126315 | 3300002027_MIS_10086049 | MIS_100860492 | 3300002027_MIS_100860492 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.890 | NA | night | NA | Autotrophy RuBisCo | NA |
| 231 | NA | K01601 | scaffold_126315 | 3300002027_MIS_10086049 | MIS_100860492 | 3300002027_MIS_100860492 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.134 | NA | day | NA | Autotrophy RuBisCo | NA |
| 347 | NA | K01601 | scaffold_126315 | 3300002027_MIS_10086049 | MIS_100860492 | 3300002027_MIS_100860492 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.262 | NA | day | NA | Autotrophy RuBisCo | NA |
| 348 | NA | K01601 | scaffold_126315 | 3300002027_MIS_10086049 | MIS_100860492 | 3300002027_MIS_100860492 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 232 | NA | K01601 | scaffold_131981 | 3300002027_MIS_10091689 | MIS_100916892 | 3300002027_MIS_100916892 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 233 | NA | K01601 | scaffold_131981 | 3300002027_MIS_10091689 | MIS_100916892 | 3300002027_MIS_100916892 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 234 | NA | K01601 | scaffold_131981 | 3300002027_MIS_10091689 | MIS_100916892 | 3300002027_MIS_100916892 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 235 | NA | K01601 | scaffold_131981 | 3300002027_MIS_10091689 | MIS_100916892 | 3300002027_MIS_100916892 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 236 | NA | K01601 | scaffold_131981 | 3300002027_MIS_10091689 | MIS_100916892 | 3300002027_MIS_100916892 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 237 | NA | K01601 | scaffold_131981 | 3300002027_MIS_10091689 | MIS_100916892 | 3300002027_MIS_100916892 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 238 | NA | K01601 | scaffold_134623 | 3300002027_MIS_10094324 | MIS_100943241 | 3300002027_MIS_100943241 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 239 | NA | K01601 | scaffold_134623 | 3300002027_MIS_10094324 | MIS_100943241 | 3300002027_MIS_100943241 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 240 | NA | K01601 | scaffold_134623 | 3300002027_MIS_10094324 | MIS_100943241 | 3300002027_MIS_100943241 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 241 | NA | K01601 | scaffold_134623 | 3300002027_MIS_10094324 | MIS_100943241 | 3300002027_MIS_100943241 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 242 | NA | K01601 | scaffold_134623 | 3300002027_MIS_10094324 | MIS_100943241 | 3300002027_MIS_100943241 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 243 | NA | K01601 | scaffold_134623 | 3300002027_MIS_10094324 | MIS_100943241 | 3300002027_MIS_100943241 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 244 | NA | K01601 | scaffold_229469 | 3300002024_MIS_1003372 | MIS_10033722 | 3300002024_MIS_10033722 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 246 | NA | K01601 | scaffold_229469 | 3300002024_MIS_1003372 | MIS_10033722 | 3300002024_MIS_10033722 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 247 | NA | K01601 | scaffold_229469 | 3300002024_MIS_1003372 | MIS_10033722 | 3300002024_MIS_10033722 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 248 | NA | K01601 | scaffold_229469 | 3300002024_MIS_1003372 | MIS_10033722 | 3300002024_MIS_10033722 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 330 | NA | K01601 | scaffold_229469 | 3300002024_MIS_1003372 | MIS_10033722 | 3300002024_MIS_10033722 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 364 | NA | K01601 | scaffold_229469 | 3300002024_MIS_1003372 | MIS_10033722 | 3300002024_MIS_10033722 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 245 | NA | K01601 | scaffold_298773 | 3300002024_MIS_1066859 | MIS_10668594 | 3300002024_MIS_10668594 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 365 | NA | K01601 | scaffold_298773 | 3300002024_MIS_1066859 | MIS_10668594 | 3300002024_MIS_10668594 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 367 | NA | K01601 | scaffold_298773 | 3300002024_MIS_1066859 | MIS_10668594 | 3300002024_MIS_10668594 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 368 | NA | K01601 | scaffold_298773 | 3300002024_MIS_1066859 | MIS_10668594 | 3300002024_MIS_10668594 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 444 | NA | K01601 | scaffold_298773 | 3300002024_MIS_1066859 | MIS_10668594 | 3300002024_MIS_10668594 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 485 | NA | K01601 | scaffold_298773 | 3300002024_MIS_1066859 | MIS_10668594 | 3300002024_MIS_10668594 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 249 | NA | K01601 | scaffold_230367 | 3300002024_MIS_1004180 | MIS_10041801 | 3300002024_MIS_10041801 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 371 | NA | K01601 | scaffold_230367 | 3300002024_MIS_1004180 | MIS_10041801 | 3300002024_MIS_10041801 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 493 | NA | K01601 | scaffold_230367 | 3300002024_MIS_1004180 | MIS_10041801 | 3300002024_MIS_10041801 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 23.123 | NA | night | NA | Autotrophy RuBisCo | NA |
| 494 | NA | K01601 | scaffold_230367 | 3300002024_MIS_1004180 | MIS_10041801 | 3300002024_MIS_10041801 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 5.561 | NA | day | NA | Autotrophy RuBisCo | NA |
| 495 | NA | K01601 | scaffold_230367 | 3300002024_MIS_1004180 | MIS_10041801 | 3300002024_MIS_10041801 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 5.090 | NA | night | NA | Autotrophy RuBisCo | NA |
| 496 | NA | K01601 | scaffold_230367 | 3300002024_MIS_1004180 | MIS_10041801 | 3300002024_MIS_10041801 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 250 | NA | K01601 | scaffold_138627 | 3300002027_MIS_10098312 | MIS_100983122 | 3300002027_MIS_100983122 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 372 | NA | K01601 | scaffold_138627 | 3300002027_MIS_10098312 | MIS_100983122 | 3300002027_MIS_100983122 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 373 | NA | K01601 | scaffold_138627 | 3300002027_MIS_10098312 | MIS_100983122 | 3300002027_MIS_100983122 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 374 | NA | K01601 | scaffold_138627 | 3300002027_MIS_10098312 | MIS_100983122 | 3300002027_MIS_100983122 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 375 | NA | K01601 | scaffold_138627 | 3300002027_MIS_10098312 | MIS_100983122 | 3300002027_MIS_100983122 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 376 | NA | K01601 | scaffold_138627 | 3300002027_MIS_10098312 | MIS_100983122 | 3300002027_MIS_100983122 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 251 | NA | K01601 | scaffold_102245 | 3300002027_MIS_10062159 | MIS_100621592 | 3300002027_MIS_100621592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 252 | NA | K01601 | scaffold_102245 | 3300002027_MIS_10062159 | MIS_100621592 | 3300002027_MIS_100621592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 253 | NA | K01601 | scaffold_102245 | 3300002027_MIS_10062159 | MIS_100621592 | 3300002027_MIS_100621592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 254 | NA | K01601 | scaffold_102245 | 3300002027_MIS_10062159 | MIS_100621592 | 3300002027_MIS_100621592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 255 | NA | K01601 | scaffold_102245 | 3300002027_MIS_10062159 | MIS_100621592 | 3300002027_MIS_100621592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 256 | NA | K01601 | scaffold_102245 | 3300002027_MIS_10062159 | MIS_100621592 | 3300002027_MIS_100621592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 257 | NA | K01601 | scaffold_306741 | 3300002024_MIS_1074269 | MIS_10742692 | 3300002024_MIS_10742692 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 258 | NA | K01601 | scaffold_306741 | 3300002024_MIS_1074269 | MIS_10742692 | 3300002024_MIS_10742692 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 259 | NA | K01601 | scaffold_306741 | 3300002024_MIS_1074269 | MIS_10742692 | 3300002024_MIS_10742692 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 377 | NA | K01601 | scaffold_306741 | 3300002024_MIS_1074269 | MIS_10742692 | 3300002024_MIS_10742692 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 497 | NA | K01601 | scaffold_306741 | 3300002024_MIS_1074269 | MIS_10742692 | 3300002024_MIS_10742692 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 561 | NA | K01601 | scaffold_306741 | 3300002024_MIS_1074269 | MIS_10742692 | 3300002024_MIS_10742692 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 260 | NA | K01601 | scaffold_47788 | 3300002027_MIS_10010557 | MIS_100105571 | 3300002027_MIS_100105571 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 380 | NA | K01601 | scaffold_47788 | 3300002027_MIS_10010557 | MIS_100105571 | 3300002027_MIS_100105571 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 382 | NA | K01601 | scaffold_47788 | 3300002027_MIS_10010557 | MIS_100105571 | 3300002027_MIS_100105571 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 383 | NA | K01601 | scaffold_47788 | 3300002027_MIS_10010557 | MIS_100105571 | 3300002027_MIS_100105571 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 384 | NA | K01601 | scaffold_47788 | 3300002027_MIS_10010557 | MIS_100105571 | 3300002027_MIS_100105571 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 385 | NA | K01601 | scaffold_47788 | 3300002027_MIS_10010557 | MIS_100105571 | 3300002027_MIS_100105571 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 261 | NA | K01601 | scaffold_240246 | 3300002024_MIS_1013131 | MIS_10131311 | 3300002024_MIS_10131311 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 262 | NA | K01601 | scaffold_240246 | 3300002024_MIS_1013131 | MIS_10131311 | 3300002024_MIS_10131311 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 263 | NA | K01601 | scaffold_240246 | 3300002024_MIS_1013131 | MIS_10131311 | 3300002024_MIS_10131311 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 264 | NA | K01601 | scaffold_240246 | 3300002024_MIS_1013131 | MIS_10131311 | 3300002024_MIS_10131311 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 265 | NA | K01601 | scaffold_240246 | 3300002024_MIS_1013131 | MIS_10131311 | 3300002024_MIS_10131311 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 266 | NA | K01601 | scaffold_240246 | 3300002024_MIS_1013131 | MIS_10131311 | 3300002024_MIS_10131311 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 267 | NA | K01601 | scaffold_246344 | 3300002024_MIS_1018687 | MIS_10186873 | 3300002024_MIS_10186873 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 268 | NA | K01601 | scaffold_246344 | 3300002024_MIS_1018687 | MIS_10186873 | 3300002024_MIS_10186873 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 269 | NA | K01601 | scaffold_246344 | 3300002024_MIS_1018687 | MIS_10186873 | 3300002024_MIS_10186873 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 270 | NA | K01601 | scaffold_246344 | 3300002024_MIS_1018687 | MIS_10186873 | 3300002024_MIS_10186873 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 271 | NA | K01601 | scaffold_246344 | 3300002024_MIS_1018687 | MIS_10186873 | 3300002024_MIS_10186873 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 272 | NA | K01601 | scaffold_246344 | 3300002024_MIS_1018687 | MIS_10186873 | 3300002024_MIS_10186873 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 273 | NA | K01601 | scaffold_25291 | 3300002026_MIS_10025292 | MIS_100252926 | 3300002026_MIS_100252926 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 395 | NA | K01601 | scaffold_25291 | 3300002026_MIS_10025292 | MIS_100252926 | 3300002026_MIS_100252926 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 504 | NA | K01601 | scaffold_25291 | 3300002026_MIS_10025292 | MIS_100252926 | 3300002026_MIS_100252926 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 518 | NA | K01601 | scaffold_25291 | 3300002026_MIS_10025292 | MIS_100252926 | 3300002026_MIS_100252926 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 519 | NA | K01601 | scaffold_25291 | 3300002026_MIS_10025292 | MIS_100252926 | 3300002026_MIS_100252926 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 520 | NA | K01601 | scaffold_25291 | 3300002026_MIS_10025292 | MIS_100252926 | 3300002026_MIS_100252926 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 274 | NA | K01601 | scaffold_157349 | 3300002027_MIS_10117005 | MIS_101170052 | 3300002027_MIS_101170052 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.150 | NA | night | NA | Autotrophy RuBisCo | NA |
| 396 | NA | K01601 | scaffold_157349 | 3300002027_MIS_10117005 | MIS_101170052 | 3300002027_MIS_101170052 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 397 | NA | K01601 | scaffold_157349 | 3300002027_MIS_10117005 | MIS_101170052 | 3300002027_MIS_101170052 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 398 | NA | K01601 | scaffold_157349 | 3300002027_MIS_10117005 | MIS_101170052 | 3300002027_MIS_101170052 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.604 | NA | day | NA | Autotrophy RuBisCo | NA |
| 399 | NA | K01601 | scaffold_157349 | 3300002027_MIS_10117005 | MIS_101170052 | 3300002027_MIS_101170052 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 400 | NA | K01601 | scaffold_157349 | 3300002027_MIS_10117005 | MIS_101170052 | 3300002027_MIS_101170052 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 275 | NA | K01601 | scaffold_107125 | 3300002027_MIS_10066993 | MIS_100669932 | 3300002027_MIS_100669932 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.209 | NA | night | NA | Autotrophy RuBisCo | NA |
| 276 | NA | K01601 | scaffold_107125 | 3300002027_MIS_10066993 | MIS_100669932 | 3300002027_MIS_100669932 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.599 | NA | day | NA | Autotrophy RuBisCo | NA |
| 277 | NA | K01601 | scaffold_107125 | 3300002027_MIS_10066993 | MIS_100669932 | 3300002027_MIS_100669932 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.149 | NA | night | NA | Autotrophy RuBisCo | NA |
| 278 | NA | K01601 | scaffold_107125 | 3300002027_MIS_10066993 | MIS_100669932 | 3300002027_MIS_100669932 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 279 | NA | K01601 | scaffold_107125 | 3300002027_MIS_10066993 | MIS_100669932 | 3300002027_MIS_100669932 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 280 | NA | K01601 | scaffold_107125 | 3300002027_MIS_10066993 | MIS_100669932 | 3300002027_MIS_100669932 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 281 | NA | K01601 | scaffold_110666 | 3300002027_MIS_10070494 | MIS_100704944 | 3300002027_MIS_100704944 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 282 | NA | K01601 | scaffold_110666 | 3300002027_MIS_10070494 | MIS_100704944 | 3300002027_MIS_100704944 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 283 | NA | K01601 | scaffold_110666 | 3300002027_MIS_10070494 | MIS_100704944 | 3300002027_MIS_100704944 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 284 | NA | K01601 | scaffold_110666 | 3300002027_MIS_10070494 | MIS_100704944 | 3300002027_MIS_100704944 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 285 | NA | K01601 | scaffold_110666 | 3300002027_MIS_10070494 | MIS_100704944 | 3300002027_MIS_100704944 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 286 | NA | K01601 | scaffold_110666 | 3300002027_MIS_10070494 | MIS_100704944 | 3300002027_MIS_100704944 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 287 | NA | K01601 | scaffold_256423 | 3300002024_MIS_1027873 | MIS_10278731 | 3300002024_MIS_10278731 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 288 | NA | K01601 | scaffold_256423 | 3300002024_MIS_1027873 | MIS_10278731 | 3300002024_MIS_10278731 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 331 | NA | K01601 | scaffold_256423 | 3300002024_MIS_1027873 | MIS_10278731 | 3300002024_MIS_10278731 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.363 | NA | night | NA | Autotrophy RuBisCo | NA |
| 332 | NA | K01601 | scaffold_256423 | 3300002024_MIS_1027873 | MIS_10278731 | 3300002024_MIS_10278731 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 407 | NA | K01601 | scaffold_256423 | 3300002024_MIS_1027873 | MIS_10278731 | 3300002024_MIS_10278731 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 487 | NA | K01601 | scaffold_256423 | 3300002024_MIS_1027873 | MIS_10278731 | 3300002024_MIS_10278731 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 289 | NA | K01601 | scaffold_332149 | 3300002024_MIS_1098114 | MIS_10981141 | 3300002024_MIS_10981141 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.276 | NA | day | NA | Autotrophy RuBisCo | NA |
| 408 | NA | K01601 | scaffold_332149 | 3300002024_MIS_1098114 | MIS_10981141 | 3300002024_MIS_10981141 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 1.872 | NA | night | NA | Autotrophy RuBisCo | NA |
| 409 | NA | K01601 | scaffold_332149 | 3300002024_MIS_1098114 | MIS_10981141 | 3300002024_MIS_10981141 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 486 | NA | K01601 | scaffold_332149 | 3300002024_MIS_1098114 | MIS_10981141 | 3300002024_MIS_10981141 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 514 | NA | K01601 | scaffold_332149 | 3300002024_MIS_1098114 | MIS_10981141 | 3300002024_MIS_10981141 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 515 | NA | K01601 | scaffold_332149 | 3300002024_MIS_1098114 | MIS_10981141 | 3300002024_MIS_10981141 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 290 | NA | K01601 | scaffold_61936 | 3300002027_MIS_10023271 | MIS_100232713 | 3300002027_MIS_100232713 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 410 | NA | K01601 | scaffold_61936 | 3300002027_MIS_10023271 | MIS_100232713 | 3300002027_MIS_100232713 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.643 | NA | day | NA | Autotrophy RuBisCo | NA |
| 530 | NA | K01601 | scaffold_61936 | 3300002027_MIS_10023271 | MIS_100232713 | 3300002027_MIS_100232713 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 570 | NA | K01601 | scaffold_61936 | 3300002027_MIS_10023271 | MIS_100232713 | 3300002027_MIS_100232713 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.721 | NA | night | NA | Autotrophy RuBisCo | NA |
| 679 | NA | K01601 | scaffold_61936 | 3300002027_MIS_10023271 | MIS_100232713 | 3300002027_MIS_100232713 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.546 | NA | night | NA | Autotrophy RuBisCo | NA |
| 697 | NA | K01601 | scaffold_61936 | 3300002027_MIS_10023271 | MIS_100232713 | 3300002027_MIS_100232713 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 291 | NA | K01601 | scaffold_91808 | 3300002027_MIS_10051865 | MIS_100518657 | 3300002027_MIS_100518657 | Ribulose bisphosphate carboxylase large chain, N-terminal domain | pfam02788 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 517 | NA | K01601 | scaffold_91808 | 3300002027_MIS_10051865 | MIS_100518657 | 3300002027_MIS_100518657 | Ribulose bisphosphate carboxylase large chain, N-terminal domain | pfam02788 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 528 | NA | K01601 | scaffold_91808 | 3300002027_MIS_10051865 | MIS_100518657 | 3300002027_MIS_100518657 | Ribulose bisphosphate carboxylase large chain, N-terminal domain | pfam02788 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 532 | NA | K01601 | scaffold_91808 | 3300002027_MIS_10051865 | MIS_100518657 | 3300002027_MIS_100518657 | Ribulose bisphosphate carboxylase large chain, N-terminal domain | pfam02788 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 551 | NA | K01601 | scaffold_91808 | 3300002027_MIS_10051865 | MIS_100518657 | 3300002027_MIS_100518657 | Ribulose bisphosphate carboxylase large chain, N-terminal domain | pfam02788 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 698 | NA | K01601 | scaffold_91808 | 3300002027_MIS_10051865 | MIS_100518657 | 3300002027_MIS_100518657 | Ribulose bisphosphate carboxylase large chain, N-terminal domain | pfam02788 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 292 | NA | K01601 | scaffold_92128 | 3300002027_MIS_10052180 | MIS_100521803 | 3300002027_MIS_100521803 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 333 | NA | K01601 | scaffold_92128 | 3300002027_MIS_10052180 | MIS_100521803 | 3300002027_MIS_100521803 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 414 | NA | K01601 | scaffold_92128 | 3300002027_MIS_10052180 | MIS_100521803 | 3300002027_MIS_100521803 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 3.162 | NA | day | NA | Autotrophy RuBisCo | NA |
| 415 | NA | K01601 | scaffold_92128 | 3300002027_MIS_10052180 | MIS_100521803 | 3300002027_MIS_100521803 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 479 | NA | K01601 | scaffold_92128 | 3300002027_MIS_10052180 | MIS_100521803 | 3300002027_MIS_100521803 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 537 | NA | K01601 | scaffold_92128 | 3300002027_MIS_10052180 | MIS_100521803 | 3300002027_MIS_100521803 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 2.630 | NA | night | NA | Autotrophy RuBisCo | NA |
| 293 | NA | K01601 | scaffold_164906 | 3300002027_MIS_10124554 | MIS_101245541 | 3300002027_MIS_101245541 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 294 | NA | K01601 | scaffold_164906 | 3300002027_MIS_10124554 | MIS_101245541 | 3300002027_MIS_101245541 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 334 | NA | K01601 | scaffold_164906 | 3300002027_MIS_10124554 | MIS_101245541 | 3300002027_MIS_101245541 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 416 | NA | K01601 | scaffold_164906 | 3300002027_MIS_10124554 | MIS_101245541 | 3300002027_MIS_101245541 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 417 | NA | K01601 | scaffold_164906 | 3300002027_MIS_10124554 | MIS_101245541 | 3300002027_MIS_101245541 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 418 | NA | K01601 | scaffold_164906 | 3300002027_MIS_10124554 | MIS_101245541 | 3300002027_MIS_101245541 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 295 | NA | K01601 | scaffold_115554 | 3300002027_MIS_10075335 | MIS_100753353 | 3300002027_MIS_100753353 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 296 | NA | K01601 | scaffold_115554 | 3300002027_MIS_10075335 | MIS_100753353 | 3300002027_MIS_100753353 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.637 | NA | night | NA | Autotrophy RuBisCo | NA |
| 297 | NA | K01601 | scaffold_115554 | 3300002027_MIS_10075335 | MIS_100753353 | 3300002027_MIS_100753353 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 298 | NA | K01601 | scaffold_115554 | 3300002027_MIS_10075335 | MIS_100753353 | 3300002027_MIS_100753353 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 335 | NA | K01601 | scaffold_115554 | 3300002027_MIS_10075335 | MIS_100753353 | 3300002027_MIS_100753353 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 336 | NA | K01601 | scaffold_115554 | 3300002027_MIS_10075335 | MIS_100753353 | 3300002027_MIS_100753353 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 299 | NA | K01601 | scaffold_257462 | 3300002024_MIS_1028812 | MIS_10288123 | 3300002024_MIS_10288123 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 3.725 | NA | night | NA | Autotrophy RuBisCo | NA |
| 300 | NA | K01601 | scaffold_257462 | 3300002024_MIS_1028812 | MIS_10288123 | 3300002024_MIS_10288123 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 301 | NA | K01601 | scaffold_257462 | 3300002024_MIS_1028812 | MIS_10288123 | 3300002024_MIS_10288123 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 4.920 | NA | night | NA | Autotrophy RuBisCo | NA |
| 302 | NA | K01601 | scaffold_257462 | 3300002024_MIS_1028812 | MIS_10288123 | 3300002024_MIS_10288123 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 419 | NA | K01601 | scaffold_257462 | 3300002024_MIS_1028812 | MIS_10288123 | 3300002024_MIS_10288123 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 2.986 | NA | day | NA | Autotrophy RuBisCo | NA |
| 499 | NA | K01601 | scaffold_257462 | 3300002024_MIS_1028812 | MIS_10288123 | 3300002024_MIS_10288123 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 303 | NA | K01601 | scaffold_54052 | 3300002027_MIS_10016079 | MIS_100160793 | 3300002027_MIS_100160793 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 304 | NA | K01601 | scaffold_54052 | 3300002027_MIS_10016079 | MIS_100160793 | 3300002027_MIS_100160793 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 420 | NA | K01601 | scaffold_54052 | 3300002027_MIS_10016079 | MIS_100160793 | 3300002027_MIS_100160793 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 421 | NA | K01601 | scaffold_54052 | 3300002027_MIS_10016079 | MIS_100160793 | 3300002027_MIS_100160793 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 422 | NA | K01601 | scaffold_54052 | 3300002027_MIS_10016079 | MIS_100160793 | 3300002027_MIS_100160793 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 423 | NA | K01601 | scaffold_54052 | 3300002027_MIS_10016079 | MIS_100160793 | 3300002027_MIS_100160793 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 305 | NA | K01601 | scaffold_116244 | 3300002027_MIS_10076024 | MIS_100760243 | 3300002027_MIS_100760243 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 337 | NA | K01601 | scaffold_116244 | 3300002027_MIS_10076024 | MIS_100760243 | 3300002027_MIS_100760243 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 338 | NA | K01601 | scaffold_116244 | 3300002027_MIS_10076024 | MIS_100760243 | 3300002027_MIS_100760243 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.341 | NA | day | NA | Autotrophy RuBisCo | NA |
| 339 | NA | K01601 | scaffold_116244 | 3300002027_MIS_10076024 | MIS_100760243 | 3300002027_MIS_100760243 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.189 | NA | night | NA | Autotrophy RuBisCo | NA |
| 340 | NA | K01601 | scaffold_116244 | 3300002027_MIS_10076024 | MIS_100760243 | 3300002027_MIS_100760243 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 1.248 | NA | night | NA | Autotrophy RuBisCo | NA |
| 341 | NA | K01601 | scaffold_116244 | 3300002027_MIS_10076024 | MIS_100760243 | 3300002027_MIS_100760243 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.223 | NA | day | NA | Autotrophy RuBisCo | NA |
| 306 | NA | K01601 | scaffold_218570 | 3300002027_MIS_10178190 | MIS_101781901 | 3300002027_MIS_101781901 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 307 | NA | K01601 | scaffold_218570 | 3300002027_MIS_10178190 | MIS_101781901 | 3300002027_MIS_101781901 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 349 | NA | K01601 | scaffold_218570 | 3300002027_MIS_10178190 | MIS_101781901 | 3300002027_MIS_101781901 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 350 | NA | K01601 | scaffold_218570 | 3300002027_MIS_10178190 | MIS_101781901 | 3300002027_MIS_101781901 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 351 | NA | K01601 | scaffold_218570 | 3300002027_MIS_10178190 | MIS_101781901 | 3300002027_MIS_101781901 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 469 | NA | K01601 | scaffold_218570 | 3300002027_MIS_10178190 | MIS_101781901 | 3300002027_MIS_101781901 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 308 | NA | K01601 | scaffold_357016 | 3300002024_MIS_1121608 | MIS_11216081 | 3300002024_MIS_11216081 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 309 | NA | K01601 | scaffold_357016 | 3300002024_MIS_1121608 | MIS_11216081 | 3300002024_MIS_11216081 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 311 | NA | K01601 | scaffold_357016 | 3300002024_MIS_1121608 | MIS_11216081 | 3300002024_MIS_11216081 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 391 | NA | K01601 | scaffold_357016 | 3300002024_MIS_1121608 | MIS_11216081 | 3300002024_MIS_11216081 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 433 | NA | K01601 | scaffold_357016 | 3300002024_MIS_1121608 | MIS_11216081 | 3300002024_MIS_11216081 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 434 | NA | K01601 | scaffold_357016 | 3300002024_MIS_1121608 | MIS_11216081 | 3300002024_MIS_11216081 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 310 | NA | K01601 | scaffold_188728 | 3300002027_MIS_10148360 | MIS_101483601 | 3300002027_MIS_101483601 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 312 | NA | K01601 | scaffold_188728 | 3300002027_MIS_10148360 | MIS_101483601 | 3300002027_MIS_101483601 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 313 | NA | K01601 | scaffold_188728 | 3300002027_MIS_10148360 | MIS_101483601 | 3300002027_MIS_101483601 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.556 | NA | day | NA | Autotrophy RuBisCo | NA |
| 314 | NA | K01601 | scaffold_188728 | 3300002027_MIS_10148360 | MIS_101483601 | 3300002027_MIS_101483601 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 315 | NA | K01601 | scaffold_188728 | 3300002027_MIS_10148360 | MIS_101483601 | 3300002027_MIS_101483601 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 342 | NA | K01601 | scaffold_188728 | 3300002027_MIS_10148360 | MIS_101483601 | 3300002027_MIS_101483601 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 316 | NA | K01601 | scaffold_188833 | 3300002027_MIS_10148465 | MIS_101484651 | 3300002027_MIS_101484651 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 438 | NA | K01601 | scaffold_188833 | 3300002027_MIS_10148465 | MIS_101484651 | 3300002027_MIS_101484651 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 439 | NA | K01601 | scaffold_188833 | 3300002027_MIS_10148465 | MIS_101484651 | 3300002027_MIS_101484651 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 440 | NA | K01601 | scaffold_188833 | 3300002027_MIS_10148465 | MIS_101484651 | 3300002027_MIS_101484651 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 441 | NA | K01601 | scaffold_188833 | 3300002027_MIS_10148465 | MIS_101484651 | 3300002027_MIS_101484651 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 442 | NA | K01601 | scaffold_188833 | 3300002027_MIS_10148465 | MIS_101484651 | 3300002027_MIS_101484651 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 317 | NA | K01601 | scaffold_117569 | 3300002027_MIS_10077340 | MIS_100773402 | 3300002027_MIS_100773402 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 318 | NA | K01601 | scaffold_117569 | 3300002027_MIS_10077340 | MIS_100773402 | 3300002027_MIS_100773402 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 319 | NA | K01601 | scaffold_117569 | 3300002027_MIS_10077340 | MIS_100773402 | 3300002027_MIS_100773402 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 320 | NA | K01601 | scaffold_117569 | 3300002027_MIS_10077340 | MIS_100773402 | 3300002027_MIS_100773402 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 321 | NA | K01601 | scaffold_117569 | 3300002027_MIS_10077340 | MIS_100773402 | 3300002027_MIS_100773402 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 322 | NA | K01601 | scaffold_117569 | 3300002027_MIS_10077340 | MIS_100773402 | 3300002027_MIS_100773402 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.495 | NA | night | NA | Autotrophy RuBisCo | NA |
| 323 | NA | K01601 | scaffold_193877 | 3300002027_MIS_10153507 | MIS_101535071 | 3300002027_MIS_101535071 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 443 | NA | K01601 | scaffold_193877 | 3300002027_MIS_10153507 | MIS_101535071 | 3300002027_MIS_101535071 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 445 | NA | K01601 | scaffold_193877 | 3300002027_MIS_10153507 | MIS_101535071 | 3300002027_MIS_101535071 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 446 | NA | K01601 | scaffold_193877 | 3300002027_MIS_10153507 | MIS_101535071 | 3300002027_MIS_101535071 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 447 | NA | K01601 | scaffold_193877 | 3300002027_MIS_10153507 | MIS_101535071 | 3300002027_MIS_101535071 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 448 | NA | K01601 | scaffold_193877 | 3300002027_MIS_10153507 | MIS_101535071 | 3300002027_MIS_101535071 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 324 | NA | K01601 | scaffold_101908 | 3300002027_MIS_10061827 | MIS_100618271 | 3300002027_MIS_100618271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.380 | NA | night | NA | Autotrophy RuBisCo | NA |
| 325 | NA | K01601 | scaffold_101908 | 3300002027_MIS_10061827 | MIS_100618271 | 3300002027_MIS_100618271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 326 | NA | K01601 | scaffold_101908 | 3300002027_MIS_10061827 | MIS_100618271 | 3300002027_MIS_100618271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.502 | NA | night | NA | Autotrophy RuBisCo | NA |
| 327 | NA | K01601 | scaffold_101908 | 3300002027_MIS_10061827 | MIS_100618271 | 3300002027_MIS_100618271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 328 | NA | K01601 | scaffold_101908 | 3300002027_MIS_10061827 | MIS_100618271 | 3300002027_MIS_100618271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 329 | NA | K01601 | scaffold_101908 | 3300002027_MIS_10061827 | MIS_100618271 | 3300002027_MIS_100618271 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 352 | NA | K01601 | scaffold_273658 | 3300002024_MIS_1043689 | MIS_10436891 | 3300002024_MIS_10436891 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 353 | NA | K01601 | scaffold_273658 | 3300002024_MIS_1043689 | MIS_10436891 | 3300002024_MIS_10436891 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 354 | NA | K01601 | scaffold_273658 | 3300002024_MIS_1043689 | MIS_10436891 | 3300002024_MIS_10436891 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 355 | NA | K01601 | scaffold_273658 | 3300002024_MIS_1043689 | MIS_10436891 | 3300002024_MIS_10436891 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 356 | NA | K01601 | scaffold_273658 | 3300002024_MIS_1043689 | MIS_10436891 | 3300002024_MIS_10436891 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 432 | NA | K01601 | scaffold_273658 | 3300002024_MIS_1043689 | MIS_10436891 | 3300002024_MIS_10436891 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 357 | NA | K01601 | scaffold_278562 | 3300002024_MIS_1048191 | MIS_10481911 | 3300002024_MIS_10481911 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.589 | NA | night | NA | Autotrophy RuBisCo | NA |
| 481 | NA | K01601 | scaffold_278562 | 3300002024_MIS_1048191 | MIS_10481911 | 3300002024_MIS_10481911 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 20.490 | NA | night | NA | Autotrophy RuBisCo | NA |
| 482 | NA | K01601 | scaffold_278562 | 3300002024_MIS_1048191 | MIS_10481911 | 3300002024_MIS_10481911 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 483 | NA | K01601 | scaffold_278562 | 3300002024_MIS_1048191 | MIS_10481911 | 3300002024_MIS_10481911 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 5.194 | NA | night | NA | Autotrophy RuBisCo | NA |
| 543 | NA | K01601 | scaffold_278562 | 3300002024_MIS_1048191 | MIS_10481911 | 3300002024_MIS_10481911 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 1.219 | NA | day | NA | Autotrophy RuBisCo | NA |
| 548 | NA | K01601 | scaffold_278562 | 3300002024_MIS_1048191 | MIS_10481911 | 3300002024_MIS_10481911 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 4.480 | NA | day | NA | Autotrophy RuBisCo | NA |
| 358 | NA | K01601 | scaffold_226766 | 3300002024_MIS_1000948 | MIS_10009481 | 3300002024_MIS_10009481 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 359 | NA | K01601 | scaffold_226766 | 3300002024_MIS_1000948 | MIS_10009481 | 3300002024_MIS_10009481 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 360 | NA | K01601 | scaffold_226766 | 3300002024_MIS_1000948 | MIS_10009481 | 3300002024_MIS_10009481 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 361 | NA | K01601 | scaffold_226766 | 3300002024_MIS_1000948 | MIS_10009481 | 3300002024_MIS_10009481 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 362 | NA | K01601 | scaffold_226766 | 3300002024_MIS_1000948 | MIS_10009481 | 3300002024_MIS_10009481 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 363 | NA | K01601 | scaffold_226766 | 3300002024_MIS_1000948 | MIS_10009481 | 3300002024_MIS_10009481 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 366 | NA | K01601 | scaffold_462480 | 3300002024_MIS_1168904 | MIS_11689041 | 3300002024_MIS_11689041 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 488 | NA | K01601 | scaffold_462480 | 3300002024_MIS_1168904 | MIS_11689041 | 3300002024_MIS_11689041 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 527 | NA | K01601 | scaffold_462480 | 3300002024_MIS_1168904 | MIS_11689041 | 3300002024_MIS_11689041 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 544 | NA | K01601 | scaffold_462480 | 3300002024_MIS_1168904 | MIS_11689041 | 3300002024_MIS_11689041 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 566 | NA | K01601 | scaffold_462480 | 3300002024_MIS_1168904 | MIS_11689041 | 3300002024_MIS_11689041 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 683 | NA | K01601 | scaffold_462480 | 3300002024_MIS_1168904 | MIS_11689041 | 3300002024_MIS_11689041 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 369 | NA | K01601 | scaffold_302355 | 3300002027_MIS_10191762 | MIS_101917623 | 3300002027_MIS_101917623 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 370 | NA | K01601 | scaffold_302355 | 3300002027_MIS_10191762 | MIS_101917623 | 3300002027_MIS_101917623 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 562 | NA | K01601 | scaffold_302355 | 3300002027_MIS_10191762 | MIS_101917623 | 3300002027_MIS_101917623 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 573 | NA | K01601 | scaffold_302355 | 3300002027_MIS_10191762 | MIS_101917623 | 3300002027_MIS_101917623 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 682 | NA | K01601 | scaffold_302355 | 3300002027_MIS_10191762 | MIS_101917623 | 3300002027_MIS_101917623 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 696 | NA | K01601 | scaffold_302355 | 3300002027_MIS_10191762 | MIS_101917623 | 3300002027_MIS_101917623 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 378 | NA | K01601 | scaffold_47288 | 3300002027_MIS_10010142 | MIS_100101421 | 3300002027_MIS_100101421 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 379 | NA | K01601 | scaffold_47288 | 3300002027_MIS_10010142 | MIS_100101421 | 3300002027_MIS_100101421 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 498 | NA | K01601 | scaffold_47288 | 3300002027_MIS_10010142 | MIS_100101421 | 3300002027_MIS_100101421 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 555 | NA | K01601 | scaffold_47288 | 3300002027_MIS_10010142 | MIS_100101421 | 3300002027_MIS_100101421 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 558 | NA | K01601 | scaffold_47288 | 3300002027_MIS_10010142 | MIS_100101421 | 3300002027_MIS_100101421 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 692 | NA | K01601 | scaffold_47288 | 3300002027_MIS_10010142 | MIS_100101421 | 3300002027_MIS_100101421 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 381 | NA | K01601 | scaffold_8168 | 3300002026_MIS_10008169 | MIS_1000816910 | 3300002026_MIS_1000816910 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.189 | NA | night | NA | Autotrophy RuBisCo | NA |
| 424 | NA | K01601 | scaffold_8168 | 3300002026_MIS_10008169 | MIS_1000816910 | 3300002026_MIS_1000816910 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 465 | NA | K01601 | scaffold_8168 | 3300002026_MIS_10008169 | MIS_1000816910 | 3300002026_MIS_1000816910 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 466 | NA | K01601 | scaffold_8168 | 3300002026_MIS_10008169 | MIS_1000816910 | 3300002026_MIS_1000816910 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 467 | NA | K01601 | scaffold_8168 | 3300002026_MIS_10008169 | MIS_1000816910 | 3300002026_MIS_1000816910 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 585 | NA | K01601 | scaffold_8168 | 3300002026_MIS_10008169 | MIS_1000816910 | 3300002026_MIS_1000816910 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 386 | NA | K01601 | scaffold_494635 | 3300002024_MIS_1170039 | MIS_11700392 | 3300002024_MIS_11700392 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 388 | NA | K01601 | scaffold_494635 | 3300002024_MIS_1170039 | MIS_11700392 | 3300002024_MIS_11700392 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 390 | NA | K01601 | scaffold_494635 | 3300002024_MIS_1170039 | MIS_11700392 | 3300002024_MIS_11700392 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 468 | NA | K01601 | scaffold_494635 | 3300002024_MIS_1170039 | MIS_11700392 | 3300002024_MIS_11700392 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 470 | NA | K01601 | scaffold_494635 | 3300002024_MIS_1170039 | MIS_11700392 | 3300002024_MIS_11700392 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 472 | NA | K01601 | scaffold_494635 | 3300002024_MIS_1170039 | MIS_11700392 | 3300002024_MIS_11700392 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 387 | NA | K01601 | scaffold_271251 | 3300002024_MIS_1041459 | MIS_10414592 | 3300002024_MIS_10414592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 428 | NA | K01601 | scaffold_271251 | 3300002024_MIS_1041459 | MIS_10414592 | 3300002024_MIS_10414592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 429 | NA | K01601 | scaffold_271251 | 3300002024_MIS_1041459 | MIS_10414592 | 3300002024_MIS_10414592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 430 | NA | K01601 | scaffold_271251 | 3300002024_MIS_1041459 | MIS_10414592 | 3300002024_MIS_10414592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 431 | NA | K01601 | scaffold_271251 | 3300002024_MIS_1041459 | MIS_10414592 | 3300002024_MIS_10414592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 507 | NA | K01601 | scaffold_271251 | 3300002024_MIS_1041459 | MIS_10414592 | 3300002024_MIS_10414592 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 389 | NA | K01601 | scaffold_696983 | 3300002024_MIS_1176608 | MIS_11766082 | 3300002024_MIS_11766082 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 427 | NA | K01601 | scaffold_696983 | 3300002024_MIS_1176608 | MIS_11766082 | 3300002024_MIS_11766082 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.721 | NA | night | NA | Autotrophy RuBisCo | NA |
| 505 | NA | K01601 | scaffold_696983 | 3300002024_MIS_1176608 | MIS_11766082 | 3300002024_MIS_11766082 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 506 | NA | K01601 | scaffold_696983 | 3300002024_MIS_1176608 | MIS_11766082 | 3300002024_MIS_11766082 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.217 | NA | day | NA | Autotrophy RuBisCo | NA |
| 546 | NA | K01601 | scaffold_696983 | 3300002024_MIS_1176608 | MIS_11766082 | 3300002024_MIS_11766082 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.952 | NA | night | NA | Autotrophy RuBisCo | NA |
| 549 | NA | K01601 | scaffold_696983 | 3300002024_MIS_1176608 | MIS_11766082 | 3300002024_MIS_11766082 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 392 | NA | K01601 | scaffold_76420 | 3300002027_MIS_10036903 | MIS_100369033 | 3300002027_MIS_100369033 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 475 | NA | K01601 | scaffold_76420 | 3300002027_MIS_10036903 | MIS_100369033 | 3300002027_MIS_100369033 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 476 | NA | K01601 | scaffold_76420 | 3300002027_MIS_10036903 | MIS_100369033 | 3300002027_MIS_100369033 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 516 | NA | K01601 | scaffold_76420 | 3300002027_MIS_10036903 | MIS_100369033 | 3300002027_MIS_100369033 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 541 | NA | K01601 | scaffold_76420 | 3300002027_MIS_10036903 | MIS_100369033 | 3300002027_MIS_100369033 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 680 | NA | K01601 | scaffold_76420 | 3300002027_MIS_10036903 | MIS_100369033 | 3300002027_MIS_100369033 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 393 | NA | K01601 | scaffold_326560 | 3300002024_MIS_1092846 | MIS_10928461 | 3300002024_MIS_10928461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 394 | NA | K01601 | scaffold_326560 | 3300002024_MIS_1092846 | MIS_10928461 | 3300002024_MIS_10928461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 478 | NA | K01601 | scaffold_326560 | 3300002024_MIS_1092846 | MIS_10928461 | 3300002024_MIS_10928461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 490 | NA | K01601 | scaffold_326560 | 3300002024_MIS_1092846 | MIS_10928461 | 3300002024_MIS_10928461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 565 | NA | K01601 | scaffold_326560 | 3300002024_MIS_1092846 | MIS_10928461 | 3300002024_MIS_10928461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 694 | NA | K01601 | scaffold_326560 | 3300002024_MIS_1092846 | MIS_10928461 | 3300002024_MIS_10928461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 401 | NA | K01601 | scaffold_159956 | 3300002027_MIS_10119607 | MIS_101196073 | 3300002027_MIS_101196073 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 402 | NA | K01601 | scaffold_159956 | 3300002027_MIS_10119607 | MIS_101196073 | 3300002027_MIS_101196073 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 403 | NA | K01601 | scaffold_159956 | 3300002027_MIS_10119607 | MIS_101196073 | 3300002027_MIS_101196073 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 404 | NA | K01601 | scaffold_159956 | 3300002027_MIS_10119607 | MIS_101196073 | 3300002027_MIS_101196073 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 405 | NA | K01601 | scaffold_159956 | 3300002027_MIS_10119607 | MIS_101196073 | 3300002027_MIS_101196073 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 406 | NA | K01601 | scaffold_159956 | 3300002027_MIS_10119607 | MIS_101196073 | 3300002027_MIS_101196073 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 411 | NA | K01601 | scaffold_263290 | 3300002027_MIS_10188746 | MIS_101887461 | 3300002027_MIS_101887461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 412 | NA | K01601 | scaffold_263290 | 3300002027_MIS_10188746 | MIS_101887461 | 3300002027_MIS_101887461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 1.154 | NA | night | NA | Autotrophy RuBisCo | NA |
| 449 | NA | K01601 | scaffold_263290 | 3300002027_MIS_10188746 | MIS_101887461 | 3300002027_MIS_101887461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 569 | NA | K01601 | scaffold_263290 | 3300002027_MIS_10188746 | MIS_101887461 | 3300002027_MIS_101887461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 571 | NA | K01601 | scaffold_263290 | 3300002027_MIS_10188746 | MIS_101887461 | 3300002027_MIS_101887461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 574 | NA | K01601 | scaffold_263290 | 3300002027_MIS_10188746 | MIS_101887461 | 3300002027_MIS_101887461 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 413 | NA | K01601 | scaffold_6364 | 3300002026_MIS_10006365 | MIS_100063655 | 3300002026_MIS_100063655 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 480 | NA | K01601 | scaffold_6364 | 3300002026_MIS_10006365 | MIS_100063655 | 3300002026_MIS_100063655 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 526 | NA | K01601 | scaffold_6364 | 3300002026_MIS_10006365 | MIS_100063655 | 3300002026_MIS_100063655 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 536 | NA | K01601 | scaffold_6364 | 3300002026_MIS_10006365 | MIS_100063655 | 3300002026_MIS_100063655 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 559 | NA | K01601 | scaffold_6364 | 3300002026_MIS_10006365 | MIS_100063655 | 3300002026_MIS_100063655 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 563 | NA | K01601 | scaffold_6364 | 3300002026_MIS_10006365 | MIS_100063655 | 3300002026_MIS_100063655 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 425 | NA | K01601 | scaffold_49667 | 3300002026_MIS_10037470 | MIS_100374701 | 3300002026_MIS_100374701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 473 | NA | K01601 | scaffold_49667 | 3300002026_MIS_10037470 | MIS_100374701 | 3300002026_MIS_100374701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 474 | NA | K01601 | scaffold_49667 | 3300002026_MIS_10037470 | MIS_100374701 | 3300002026_MIS_100374701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 477 | NA | K01601 | scaffold_49667 | 3300002026_MIS_10037470 | MIS_100374701 | 3300002026_MIS_100374701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 502 | NA | K01601 | scaffold_49667 | 3300002026_MIS_10037470 | MIS_100374701 | 3300002026_MIS_100374701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 557 | NA | K01601 | scaffold_49667 | 3300002026_MIS_10037470 | MIS_100374701 | 3300002026_MIS_100374701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 426 | NA | K01601 | scaffold_76566 | 3300002027_MIS_10037045 | MIS_100370453 | 3300002027_MIS_100370453 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 471 | NA | K01601 | scaffold_76566 | 3300002027_MIS_10037045 | MIS_100370453 | 3300002027_MIS_100370453 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 511 | NA | K01601 | scaffold_76566 | 3300002027_MIS_10037045 | MIS_100370453 | 3300002027_MIS_100370453 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 560 | NA | K01601 | scaffold_76566 | 3300002027_MIS_10037045 | MIS_100370453 | 3300002027_MIS_100370453 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 681 | NA | K01601 | scaffold_76566 | 3300002027_MIS_10037045 | MIS_100370453 | 3300002027_MIS_100370453 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 695 | NA | K01601 | scaffold_76566 | 3300002027_MIS_10037045 | MIS_100370453 | 3300002027_MIS_100370453 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 435 | NA | K01601 | scaffold_98031 | 3300002027_MIS_10058001 | MIS_100580011 | 3300002027_MIS_100580011 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 436 | NA | K01601 | scaffold_98031 | 3300002027_MIS_10058001 | MIS_100580011 | 3300002027_MIS_100580011 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 437 | NA | K01601 | scaffold_98031 | 3300002027_MIS_10058001 | MIS_100580011 | 3300002027_MIS_100580011 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 539 | NA | K01601 | scaffold_98031 | 3300002027_MIS_10058001 | MIS_100580011 | 3300002027_MIS_100580011 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 582 | NA | K01601 | scaffold_98031 | 3300002027_MIS_10058001 | MIS_100580011 | 3300002027_MIS_100580011 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 684 | NA | K01601 | scaffold_98031 | 3300002027_MIS_10058001 | MIS_100580011 | 3300002027_MIS_100580011 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.691 | NA | night | NA | Autotrophy RuBisCo | NA |
| 450 | NA | K01601 | scaffold_123484 | 3300002027_MIS_10083235 | MIS_100832352 | 3300002027_MIS_100832352 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.257 | NA | night | NA | Autotrophy RuBisCo | NA |
| 451 | NA | K01601 | scaffold_123484 | 3300002027_MIS_10083235 | MIS_100832352 | 3300002027_MIS_100832352 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 452 | NA | K01601 | scaffold_123484 | 3300002027_MIS_10083235 | MIS_100832352 | 3300002027_MIS_100832352 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 453 | NA | K01601 | scaffold_123484 | 3300002027_MIS_10083235 | MIS_100832352 | 3300002027_MIS_100832352 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 454 | NA | K01601 | scaffold_123484 | 3300002027_MIS_10083235 | MIS_100832352 | 3300002027_MIS_100832352 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 455 | NA | K01601 | scaffold_123484 | 3300002027_MIS_10083235 | MIS_100832352 | 3300002027_MIS_100832352 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 458 | NA | K01601 | scaffold_217334 | 3300002027_MIS_10176956 | MIS_101769563 | 3300002027_MIS_101769563 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 459 | NA | K01601 | scaffold_217334 | 3300002027_MIS_10176956 | MIS_101769563 | 3300002027_MIS_101769563 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 460 | NA | K01601 | scaffold_217334 | 3300002027_MIS_10176956 | MIS_101769563 | 3300002027_MIS_101769563 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 576 | NA | K01601 | scaffold_217334 | 3300002027_MIS_10176956 | MIS_101769563 | 3300002027_MIS_101769563 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 577 | NA | K01601 | scaffold_217334 | 3300002027_MIS_10176956 | MIS_101769563 | 3300002027_MIS_101769563 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 578 | NA | K01601 | scaffold_217334 | 3300002027_MIS_10176956 | MIS_101769563 | 3300002027_MIS_101769563 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 461 | NA | K01601 | scaffold_69590 | 3300002027_MIS_10030425 | MIS_100304252 | 3300002027_MIS_100304252 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 462 | NA | K01601 | scaffold_69590 | 3300002027_MIS_10030425 | MIS_100304252 | 3300002027_MIS_100304252 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 463 | NA | K01601 | scaffold_69590 | 3300002027_MIS_10030425 | MIS_100304252 | 3300002027_MIS_100304252 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 513 | NA | K01601 | scaffold_69590 | 3300002027_MIS_10030425 | MIS_100304252 | 3300002027_MIS_100304252 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 567 | NA | K01601 | scaffold_69590 | 3300002027_MIS_10030425 | MIS_100304252 | 3300002027_MIS_100304252 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 581 | NA | K01601 | scaffold_69590 | 3300002027_MIS_10030425 | MIS_100304252 | 3300002027_MIS_100304252 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 484 | NA | K01601 | scaffold_330724 | 3300002024_MIS_1096782 | MIS_10967822 | 3300002024_MIS_10967822 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 521 | NA | K01601 | scaffold_330724 | 3300002024_MIS_1096782 | MIS_10967822 | 3300002024_MIS_10967822 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 522 | NA | K01601 | scaffold_330724 | 3300002024_MIS_1096782 | MIS_10967822 | 3300002024_MIS_10967822 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 523 | NA | K01601 | scaffold_330724 | 3300002024_MIS_1096782 | MIS_10967822 | 3300002024_MIS_10967822 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 525 | NA | K01601 | scaffold_330724 | 3300002024_MIS_1096782 | MIS_10967822 | 3300002024_MIS_10967822 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 689 | NA | K01601 | scaffold_330724 | 3300002024_MIS_1096782 | MIS_10967822 | 3300002024_MIS_10967822 | NA | NA | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 489 | NA | K01601 | scaffold_93530 | 3300002027_MIS_10053558 | MIS_100535585 | 3300002027_MIS_100535585 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 491 | NA | K01601 | scaffold_93530 | 3300002027_MIS_10053558 | MIS_100535585 | 3300002027_MIS_100535585 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 501 | NA | K01601 | scaffold_93530 | 3300002027_MIS_10053558 | MIS_100535585 | 3300002027_MIS_100535585 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 503 | NA | K01601 | scaffold_93530 | 3300002027_MIS_10053558 | MIS_100535585 | 3300002027_MIS_100535585 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 538 | NA | K01601 | scaffold_93530 | 3300002027_MIS_10053558 | MIS_100535585 | 3300002027_MIS_100535585 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 568 | NA | K01601 | scaffold_93530 | 3300002027_MIS_10053558 | MIS_100535585 | 3300002027_MIS_100535585 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 492 | NA | K01601 | scaffold_461464 | 3300002024_MIS_1168867 | MIS_11688671 | 3300002024_MIS_11688671 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 508 | NA | K01601 | scaffold_461464 | 3300002024_MIS_1168867 | MIS_11688671 | 3300002024_MIS_11688671 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 533 | NA | K01601 | scaffold_461464 | 3300002024_MIS_1168867 | MIS_11688671 | 3300002024_MIS_11688671 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 553 | NA | K01601 | scaffold_461464 | 3300002024_MIS_1168867 | MIS_11688671 | 3300002024_MIS_11688671 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.301 | NA | night | NA | Autotrophy RuBisCo | NA |
| 554 | NA | K01601 | scaffold_461464 | 3300002024_MIS_1168867 | MIS_11688671 | 3300002024_MIS_11688671 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 688 | NA | K01601 | scaffold_461464 | 3300002024_MIS_1168867 | MIS_11688671 | 3300002024_MIS_11688671 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 500 | NA | K01601 | scaffold_611987 | 3300002027_MIS_10199808 | MIS_101998085 | 3300002027_MIS_101998085 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy RuBisCo | NA |
| 509 | NA | K01601 | scaffold_595269 | 3300002024_MIS_1173722 | MIS_11737221 | 3300002024_MIS_11737221 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 510 | NA | K01601 | scaffold_595269 | 3300002024_MIS_1173722 | MIS_11737221 | 3300002024_MIS_11737221 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 5.895 | NA | day | NA | Autotrophy RuBisCo | NA |
| 524 | NA | K01601 | scaffold_595269 | 3300002024_MIS_1173722 | MIS_11737221 | 3300002024_MIS_11737221 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 11.230 | NA | night | NA | Autotrophy RuBisCo | NA |
| 534 | NA | K01601 | scaffold_595269 | 3300002024_MIS_1173722 | MIS_11737221 | 3300002024_MIS_11737221 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 1.649 | NA | night | NA | Autotrophy RuBisCo | NA |
| 535 | NA | K01601 | scaffold_595269 | 3300002024_MIS_1173722 | MIS_11737221 | 3300002024_MIS_11737221 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.910 | NA | day | NA | Autotrophy RuBisCo | NA |
| 685 | NA | K01601 | scaffold_595269 | 3300002024_MIS_1173722 | MIS_11737221 | 3300002024_MIS_11737221 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 512 | NA | K01601 | scaffold_611987 | 3300002027_MIS_10199808 | MIS_101998084 | 3300002027_MIS_101998084 | Ribulose bisphosphate carboxylase large chain, N-terminal domain | pfam02788 | rbcL | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy RuBisCo | NA |
| 529 | NA | K01601 | scaffold_53438 | 3300002026_MIS_10037904 | MIS_100379048 | 3300002026_MIS_100379048 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy RuBisCo | NA |
| 531 | NA | K01601 | scaffold_83491 | 3300002027_MIS_10043737 | MIS_100437376 | 3300002027_MIS_100437376 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 1.132 | NA | day | NA | Autotrophy RuBisCo | NA |
| 540 | NA | K01601 | scaffold_83491 | 3300002027_MIS_10043737 | MIS_100437376 | 3300002027_MIS_100437376 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 9.311 | NA | night | NA | Autotrophy RuBisCo | NA |
| 545 | NA | K01601 | scaffold_83491 | 3300002027_MIS_10043737 | MIS_100437376 | 3300002027_MIS_100437376 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 9.934 | NA | night | NA | Autotrophy RuBisCo | NA |
| 584 | NA | K01601 | scaffold_83491 | 3300002027_MIS_10043737 | MIS_100437376 | 3300002027_MIS_100437376 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 9.164 | NA | day | NA | Autotrophy RuBisCo | NA |
| 687 | NA | K01601 | scaffold_83491 | 3300002027_MIS_10043737 | MIS_100437376 | 3300002027_MIS_100437376 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 3.083 | NA | day | NA | Autotrophy RuBisCo | NA |
| 691 | NA | K01601 | scaffold_83491 | 3300002027_MIS_10043737 | MIS_100437376 | 3300002027_MIS_100437376 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.684 | NA | night | NA | Autotrophy RuBisCo | NA |
| 542 | NA | K01601 | scaffold_80044 | 3300002027_MIS_10040399 | MIS_100403993 | 3300002027_MIS_100403993 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 1.757 | NA | night | NA | Autotrophy RuBisCo | NA |
| 556 | NA | K01601 | scaffold_80044 | 3300002027_MIS_10040399 | MIS_100403993 | 3300002027_MIS_100403993 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 572 | NA | K01601 | scaffold_80044 | 3300002027_MIS_10040399 | MIS_100403993 | 3300002027_MIS_100403993 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.706 | NA | day | NA | Autotrophy RuBisCo | NA |
| 583 | NA | K01601 | scaffold_80044 | 3300002027_MIS_10040399 | MIS_100403993 | 3300002027_MIS_100403993 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 7.176 | NA | night | NA | Autotrophy RuBisCo | NA |
| 686 | NA | K01601 | scaffold_80044 | 3300002027_MIS_10040399 | MIS_100403993 | 3300002027_MIS_100403993 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.582 | NA | day | NA | Autotrophy RuBisCo | NA |
| 690 | NA | K01601 | scaffold_80044 | 3300002027_MIS_10040399 | MIS_100403993 | 3300002027_MIS_100403993 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.741 | NA | night | NA | Autotrophy RuBisCo | NA |
| 547 | NA | K01601 | scaffold_264506 | 3300002024_MIS_1035270 | MIS_10352701 | 3300002024_MIS_10352701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 552 | NA | K01601 | scaffold_264506 | 3300002024_MIS_1035270 | MIS_10352701 | 3300002024_MIS_10352701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 564 | NA | K01601 | scaffold_264506 | 3300002024_MIS_1035270 | MIS_10352701 | 3300002024_MIS_10352701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 575 | NA | K01601 | scaffold_264506 | 3300002024_MIS_1035270 | MIS_10352701 | 3300002024_MIS_10352701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 579 | NA | K01601 | scaffold_264506 | 3300002024_MIS_1035270 | MIS_10352701 | 3300002024_MIS_10352701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy RuBisCo | NA |
| 580 | NA | K01601 | scaffold_264506 | 3300002024_MIS_1035270 | MIS_10352701 | 3300002024_MIS_10352701 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy RuBisCo | NA |
| 550 | NA | K01601 | scaffold_53438 | 3300002026_MIS_10037904 | MIS_100379047 | 3300002026_MIS_100379047 | Ribulose 1,5-bisphosphate carboxylase, large subunit | COG1850 | rbcL | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy RuBisCo | NA |
| 586 | NA | K08691 | scaffold_400648 | 3300002024_MIS_1163492 | MIS_11634921 | 3300002024_MIS_11634921 | HpcH/HpaI aldolase/citrate lyase family | pfam03328 | mcl | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy 3HP | NA |
| 587 | NA | K08691 | scaffold_400648 | 3300002024_MIS_1163492 | MIS_11634921 | 3300002024_MIS_11634921 | HpcH/HpaI aldolase/citrate lyase family | pfam03328 | mcl | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy 3HP | NA |
| 588 | NA | K08691 | scaffold_400648 | 3300002024_MIS_1163492 | MIS_11634921 | 3300002024_MIS_11634921 | HpcH/HpaI aldolase/citrate lyase family | pfam03328 | mcl | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy 3HP | NA |
| 589 | NA | K08691 | scaffold_400648 | 3300002024_MIS_1163492 | MIS_11634921 | 3300002024_MIS_11634921 | HpcH/HpaI aldolase/citrate lyase family | pfam03328 | mcl | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy 3HP | NA |
| 590 | NA | K08691 | scaffold_400648 | 3300002024_MIS_1163492 | MIS_11634921 | 3300002024_MIS_11634921 | HpcH/HpaI aldolase/citrate lyase family | pfam03328 | mcl | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy 3HP | NA |
| 693 | NA | K08691 | scaffold_400648 | 3300002024_MIS_1163492 | MIS_11634921 | 3300002024_MIS_11634921 | HpcH/HpaI aldolase/citrate lyase family | pfam03328 | mcl | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy 3HP | NA |
| 591 | NA | K14138 | scaffold_161136 | 3300002027_MIS_10120787 | MIS_101207871 | 3300002027_MIS_101207871 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 594 | NA | K14138 | scaffold_161136 | 3300002027_MIS_10120787 | MIS_101207871 | 3300002027_MIS_101207871 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 636 | NA | K14138 | scaffold_161136 | 3300002027_MIS_10120787 | MIS_101207871 | 3300002027_MIS_101207871 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 639 | NA | K14138 | scaffold_161136 | 3300002027_MIS_10120787 | MIS_101207871 | 3300002027_MIS_101207871 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 640 | NA | K14138 | scaffold_161136 | 3300002027_MIS_10120787 | MIS_101207871 | 3300002027_MIS_101207871 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 641 | NA | K14138 | scaffold_161136 | 3300002027_MIS_10120787 | MIS_101207871 | 3300002027_MIS_101207871 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.481 | NA | night | NA | Autotrophy WLP | NA |
| 592 | NA | K14138 | scaffold_137721 | 3300002027_MIS_10097410 | MIS_100974101 | 3300002027_MIS_100974101 | NA | NA | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 593 | NA | K14138 | scaffold_137721 | 3300002027_MIS_10097410 | MIS_100974101 | 3300002027_MIS_100974101 | NA | NA | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 612 | NA | K14138 | scaffold_137721 | 3300002027_MIS_10097410 | MIS_100974101 | 3300002027_MIS_100974101 | NA | NA | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 614 | NA | K14138 | scaffold_137721 | 3300002027_MIS_10097410 | MIS_100974101 | 3300002027_MIS_100974101 | NA | NA | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 616 | NA | K14138 | scaffold_137721 | 3300002027_MIS_10097410 | MIS_100974101 | 3300002027_MIS_100974101 | NA | NA | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 635 | NA | K14138 | scaffold_137721 | 3300002027_MIS_10097410 | MIS_100974101 | 3300002027_MIS_100974101 | NA | NA | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 595 | NA | K14138 | scaffold_102549 | 3300002027_MIS_10062459 | MIS_100624591 | 3300002027_MIS_100624591 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.188 | NA | night | NA | Autotrophy WLP | NA |
| 599 | NA | K14138 | scaffold_102549 | 3300002027_MIS_10062459 | MIS_100624591 | 3300002027_MIS_100624591 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 620 | NA | K14138 | scaffold_102549 | 3300002027_MIS_10062459 | MIS_100624591 | 3300002027_MIS_100624591 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 623 | NA | K14138 | scaffold_102549 | 3300002027_MIS_10062459 | MIS_100624591 | 3300002027_MIS_100624591 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 625 | NA | K14138 | scaffold_102549 | 3300002027_MIS_10062459 | MIS_100624591 | 3300002027_MIS_100624591 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 627 | NA | K14138 | scaffold_102549 | 3300002027_MIS_10062459 | MIS_100624591 | 3300002027_MIS_100624591 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 596 | NA | K14138 | scaffold_121641 | 3300002027_MIS_10081400 | MIS_100814001 | 3300002027_MIS_100814001 | NA | NA | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 603 | NA | K14138 | scaffold_121641 | 3300002027_MIS_10081400 | MIS_100814001 | 3300002027_MIS_100814001 | NA | NA | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 604 | NA | K14138 | scaffold_121641 | 3300002027_MIS_10081400 | MIS_100814001 | 3300002027_MIS_100814001 | NA | NA | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 609 | NA | K14138 | scaffold_121641 | 3300002027_MIS_10081400 | MIS_100814001 | 3300002027_MIS_100814001 | NA | NA | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 610 | NA | K14138 | scaffold_121641 | 3300002027_MIS_10081400 | MIS_100814001 | 3300002027_MIS_100814001 | NA | NA | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 628 | NA | K14138 | scaffold_121641 | 3300002027_MIS_10081400 | MIS_100814001 | 3300002027_MIS_100814001 | NA | NA | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 597 | NA | K14138 | scaffold_178801 | 3300002027_MIS_10138437 | MIS_101384372 | 3300002027_MIS_101384372 | NA | NA | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 600 | NA | K14138 | scaffold_178801 | 3300002027_MIS_10138437 | MIS_101384372 | 3300002027_MIS_101384372 | NA | NA | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 645 | NA | K14138 | scaffold_178801 | 3300002027_MIS_10138437 | MIS_101384372 | 3300002027_MIS_101384372 | NA | NA | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 646 | NA | K14138 | scaffold_178801 | 3300002027_MIS_10138437 | MIS_101384372 | 3300002027_MIS_101384372 | NA | NA | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 647 | NA | K14138 | scaffold_178801 | 3300002027_MIS_10138437 | MIS_101384372 | 3300002027_MIS_101384372 | NA | NA | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 650 | NA | K14138 | scaffold_178801 | 3300002027_MIS_10138437 | MIS_101384372 | 3300002027_MIS_101384372 | NA | NA | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 598 | NA | K14138 | scaffold_78611 | 3300002027_MIS_10039008 | MIS_100390082 | 3300002027_MIS_100390082 | Domain of unknown function (DUF3368) | pfam11848 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 601 | NA | K14138 | scaffold_78611 | 3300002027_MIS_10039008 | MIS_100390082 | 3300002027_MIS_100390082 | Domain of unknown function (DUF3368) | pfam11848 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 615 | NA | K14138 | scaffold_78611 | 3300002027_MIS_10039008 | MIS_100390082 | 3300002027_MIS_100390082 | Domain of unknown function (DUF3368) | pfam11848 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 638 | NA | K14138 | scaffold_78611 | 3300002027_MIS_10039008 | MIS_100390082 | 3300002027_MIS_100390082 | Domain of unknown function (DUF3368) | pfam11848 | acsB | Carbon metabolism | cDNA 2012-3D | 0.316 | NA | day | NA | Autotrophy WLP | NA |
| 649 | NA | K14138 | scaffold_78611 | 3300002027_MIS_10039008 | MIS_100390082 | 3300002027_MIS_100390082 | Domain of unknown function (DUF3368) | pfam11848 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 657 | NA | K14138 | scaffold_78611 | 3300002027_MIS_10039008 | MIS_100390082 | 3300002027_MIS_100390082 | Domain of unknown function (DUF3368) | pfam11848 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 602 | NA | K14138 | scaffold_218468 | 3300002027_MIS_10178088 | MIS_101780881 | 3300002027_MIS_101780881 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 608 | NA | K14138 | scaffold_218468 | 3300002027_MIS_10178088 | MIS_101780881 | 3300002027_MIS_101780881 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 651 | NA | K14138 | scaffold_218468 | 3300002027_MIS_10178088 | MIS_101780881 | 3300002027_MIS_101780881 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 666 | NA | K14138 | scaffold_218468 | 3300002027_MIS_10178088 | MIS_101780881 | 3300002027_MIS_101780881 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 667 | NA | K14138 | scaffold_218468 | 3300002027_MIS_10178088 | MIS_101780881 | 3300002027_MIS_101780881 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 668 | NA | K14138 | scaffold_218468 | 3300002027_MIS_10178088 | MIS_101780881 | 3300002027_MIS_101780881 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 605 | NA | K14138 | scaffold_376143 | 3300002024_MIS_1139927 | MIS_11399271 | 3300002024_MIS_11399271 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 642 | NA | K14138 | scaffold_376143 | 3300002024_MIS_1139927 | MIS_11399271 | 3300002024_MIS_11399271 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 643 | NA | K14138 | scaffold_376143 | 3300002024_MIS_1139927 | MIS_11399271 | 3300002024_MIS_11399271 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 662 | NA | K14138 | scaffold_376143 | 3300002024_MIS_1139927 | MIS_11399271 | 3300002024_MIS_11399271 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 664 | NA | K14138 | scaffold_376143 | 3300002024_MIS_1139927 | MIS_11399271 | 3300002024_MIS_11399271 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 665 | NA | K14138 | scaffold_376143 | 3300002024_MIS_1139927 | MIS_11399271 | 3300002024_MIS_11399271 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 606 | NA | K14138 | scaffold_373245 | 3300002024_MIS_1137162 | MIS_11371621 | 3300002024_MIS_11371621 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 607 | NA | K14138 | scaffold_373245 | 3300002024_MIS_1137162 | MIS_11371621 | 3300002024_MIS_11371621 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 648 | NA | K14138 | scaffold_373245 | 3300002024_MIS_1137162 | MIS_11371621 | 3300002024_MIS_11371621 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 661 | NA | K14138 | scaffold_373245 | 3300002024_MIS_1137162 | MIS_11371621 | 3300002024_MIS_11371621 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 669 | NA | K14138 | scaffold_373245 | 3300002024_MIS_1137162 | MIS_11371621 | 3300002024_MIS_11371621 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 672 | NA | K14138 | scaffold_373245 | 3300002024_MIS_1137162 | MIS_11371621 | 3300002024_MIS_11371621 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 611 | NA | K14138 | scaffold_150307 | 3300002027_MIS_10109974 | MIS_101099741 | 3300002027_MIS_101099741 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 617 | NA | K14138 | scaffold_150307 | 3300002027_MIS_10109974 | MIS_101099741 | 3300002027_MIS_101099741 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 618 | NA | K14138 | scaffold_150307 | 3300002027_MIS_10109974 | MIS_101099741 | 3300002027_MIS_101099741 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 631 | NA | K14138 | scaffold_150307 | 3300002027_MIS_10109974 | MIS_101099741 | 3300002027_MIS_101099741 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 655 | NA | K14138 | scaffold_150307 | 3300002027_MIS_10109974 | MIS_101099741 | 3300002027_MIS_101099741 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 656 | NA | K14138 | scaffold_150307 | 3300002027_MIS_10109974 | MIS_101099741 | 3300002027_MIS_101099741 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 613 | NA | K14138 | scaffold_51981 | 3300002027_MIS_10014235 | MIS_100142354 | 3300002027_MIS_100142354 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 624 | NA | K14138 | scaffold_51981 | 3300002027_MIS_10014235 | MIS_100142354 | 3300002027_MIS_100142354 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 626 | NA | K14138 | scaffold_51981 | 3300002027_MIS_10014235 | MIS_100142354 | 3300002027_MIS_100142354 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 658 | NA | K14138 | scaffold_51981 | 3300002027_MIS_10014235 | MIS_100142354 | 3300002027_MIS_100142354 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 659 | NA | K14138 | scaffold_51981 | 3300002027_MIS_10014235 | MIS_100142354 | 3300002027_MIS_100142354 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 660 | NA | K14138 | scaffold_51981 | 3300002027_MIS_10014235 | MIS_100142354 | 3300002027_MIS_100142354 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.159 | NA | night | NA | Autotrophy WLP | NA |
| 619 | NA | K14138 | scaffold_310501 | 3300002024_MIS_1077783 | MIS_10777831 | 3300002024_MIS_10777831 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 630 | NA | K14138 | scaffold_310501 | 3300002024_MIS_1077783 | MIS_10777831 | 3300002024_MIS_10777831 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 632 | NA | K14138 | scaffold_310501 | 3300002024_MIS_1077783 | MIS_10777831 | 3300002024_MIS_10777831 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 633 | NA | K14138 | scaffold_310501 | 3300002024_MIS_1077783 | MIS_10777831 | 3300002024_MIS_10777831 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 652 | NA | K14138 | scaffold_310501 | 3300002024_MIS_1077783 | MIS_10777831 | 3300002024_MIS_10777831 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 653 | NA | K14138 | scaffold_310501 | 3300002024_MIS_1077783 | MIS_10777831 | 3300002024_MIS_10777831 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 621 | NA | K14138 | scaffold_81123 | 3300002027_MIS_10041442 | MIS_100414422 | 3300002027_MIS_100414422 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 622 | NA | K14138 | scaffold_81123 | 3300002027_MIS_10041442 | MIS_100414422 | 3300002027_MIS_100414422 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 644 | NA | K14138 | scaffold_81123 | 3300002027_MIS_10041442 | MIS_100414422 | 3300002027_MIS_100414422 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 663 | NA | K14138 | scaffold_81123 | 3300002027_MIS_10041442 | MIS_100414422 | 3300002027_MIS_100414422 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 670 | NA | K14138 | scaffold_81123 | 3300002027_MIS_10041442 | MIS_100414422 | 3300002027_MIS_100414422 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy WLP | NA |
| 671 | NA | K14138 | scaffold_81123 | 3300002027_MIS_10041442 | MIS_100414422 | 3300002027_MIS_100414422 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy WLP | NA |
| 629 | NA | K14138 | scaffold_69874 | 3300002027_MIS_10030689 | MIS_100306892 | 3300002027_MIS_100306892 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy WLP | NA |
| 634 | NA | K14138 | scaffold_510462 | 3300002024_MIS_1170680 | MIS_11706802 | 3300002024_MIS_11706802 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy WLP | NA |
| 637 | NA | K14138 | scaffold_510462 | 3300002024_MIS_1170680 | MIS_11706801 | 3300002024_MIS_11706801 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy WLP | NA |
| 654 | NA | K14138 | scaffold_69874 | 3300002027_MIS_10030689 | MIS_100306891 | 3300002027_MIS_100306891 | CO dehydrogenase/acetyl-CoA synthase beta subunit | COG1614 | acsB | Carbon metabolism | NA | NA | NA | NA | NA | Autotrophy WLP | NA |
| 673 | NA | K15231 | scaffold_88462 | 3300002027_MIS_10048588 | MIS_100485881 | 3300002027_MIS_100485881 | NA | NA | aclB | Carbon metabolism | cDNA 2012-4N | 0.000 | NA | night | NA | Autotrophy rTCA | NA |
| 674 | NA | K15231 | scaffold_88462 | 3300002027_MIS_10048588 | MIS_100485881 | 3300002027_MIS_100485881 | NA | NA | aclB | Carbon metabolism | cDNA 2012-1D | 0.000 | NA | day | NA | Autotrophy rTCA | NA |
| 675 | NA | K15231 | scaffold_88462 | 3300002027_MIS_10048588 | MIS_100485881 | 3300002027_MIS_100485881 | NA | NA | aclB | Carbon metabolism | cDNA 2012-2D | 0.000 | NA | day | NA | Autotrophy rTCA | NA |
| 676 | NA | K15231 | scaffold_88462 | 3300002027_MIS_10048588 | MIS_100485881 | 3300002027_MIS_100485881 | NA | NA | aclB | Carbon metabolism | cDNA 2012-3D | 0.000 | NA | day | NA | Autotrophy rTCA | NA |
| 677 | NA | K15231 | scaffold_88462 | 3300002027_MIS_10048588 | MIS_100485881 | 3300002027_MIS_100485881 | NA | NA | aclB | Carbon metabolism | cDNA 2012-6N | 0.000 | NA | night | NA | Autotrophy rTCA | NA |
| 678 | NA | K15231 | scaffold_88462 | 3300002027_MIS_10048588 | MIS_100485881 | 3300002027_MIS_100485881 | NA | NA | aclB | Carbon metabolism | cDNA 2012-5N | 0.000 | NA | night | NA | Autotrophy rTCA | NA |
What do these column names mean?
Figure 6, Relative abundance of transcripts for key genes in active autotrophic pathways normalized by total number of sequences in each sample.
What is relative abundance of taxa across time (in the metagenome), and what is their contribution to the metatranscriptomic samples? I lumped together MAGs of the same taxonomy. For each MAG in each sample, I used the average coverage of contigs assigned to that MAG.
Though the Phormidium MAG is very important to the MIS metagenome and metatranscriptomic data, it’s actually not that well binned. There are multiple copies of SCGs (single copy genes) on contigs that are taxonomically distinct on a genus level, suggesting strain heterogeneity in the MAG. I extracted all the contigs from the Phormidium MAG that had a SCG, then looked at the length of that contig, the length of the SCG, the position of the SCG on the contig, and the taxonomy of the contig
In this graph, each bar represents one contig, and the colored portion represents the location and length of a SCG. The contigs are ordered by length, with the longest contig with a SCG on the left. The color relates to the taxonomy assigned to that contig. Thankfully, all the contigs were cyanobacterial in taxonomy.
Putative bacillariophyte diatoms are present in these data, and we can see potential chloroplasts by the presence of photosynthetic genes on these contigs. In this graph, I’ve evaluated the average coverages of putative chloroplasts in the metagenome (Average_gDNA) and metatranscriptomic data (Average_cDNA), and grouped them by day/night. The y-axis is log-transformed average coverage. Putative chloroplasts are plotted on the x-axis. Labels comprise the MAG bin to which it belongs, and the length of the contig.
Note that Bin_3_3 has three putative chloroplast contigs, two of which are pretty good sized (30k and 40k). In contrast, Bin_3_1 has only two putative chloroplast contigs (and short ones at that) attributed to it. However, one of its short (5856bp) chloroplast contigs has way more coverage in the metatranscriptomic data than expected from the metagenome, and more than those belonging to Bin_3_3.
This is an expanded version of Figure 2, plotting sample-normalized TPM.
When figuring out whether Phormidium anoxygenic photosynthesis (indicated by sqr) is prevalent, we examined the expression of other photosystem I genes such as psaL and psaX. The activity levels of these two photosystem I genes are similar to the expression of type I sqr in Phormidium.
What oxidases is Phormidium expressing?
Building from Figure 5, what are the expression patterns of reductive dsrA and dsrD in day and night? Do highly-expressed genes belong to any high-quality MAGs?
In this graph, dsrA and dsrD from the same contig are plotted adjacent to each other. About half the contigs were binned. Three contigs with dsrAD were not binned, so I relied upon the taxonomy of the contig. The first panel of the graph is the sample-normalized TPM, and contigs have this metric calculated for its dsrAD genes.
The second panel is bin- and sample-normalized TPM of contigs with dsrAD that belonged to MAGs. The third panel plots the % complete of the MAGs in the metagenome. The fourth and fifth panels show the average coverages in the metagenome and metatranscriptomic data for those MAGs. Note that the contigs that were not able to be binned, are not shown in these panels.
What other kinds of sulfur cycling genes are observed in the metagenome and metatranscriptomic data? Here I have plotted the sample-normalized TPM of fccA, fccB, and soxA genes in daytime and nighttime. Genes are labeled on the x-axis. If the genes were on contigs that were binned, the MAG bins are included in the x-axis label.
These are the summary statistics of the 144 MAGs extracted from the metagenome.
Then the following columns are key metabolisms we evaluated the MAGs for indicator genes. An “X” in the field means that the indicator gene in the parentheses was found in the MAG.
| MAG | total_length | percent_completion | percent_redundancy | Taxonomy | Mean gDNA coverage | Mean cDNA coverage | Autotrophy (Rubisco) | Autotrophy WL Pathway (acsB) | Photosystem I (psaA) | Photosystem II (psbA) | AP reaction cores (pufL/M) | Bacteriochlorophyll (bchX/Y/Z) | Denitrification (nirK) | Nitrogen fixation (nifH+D/K) | H2 oxidation (hupL/hydB) | Methane oxidation (mmoC) | Oxygen respiration (cbo3, cbb3, cox1, cb1) | S reduction/oxidation (dsrA/rdsrA) | Sulfide redox (fcc) | Sulfite oxidation (aprA) | Thiosulfate oxidation (soxA) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bin_1 | 11033395 | 70.4 | 56.34 | Cyanobacteria;Phormidium | 203.005 | 181.212 | X | NA | X | X | NA | NA | NA | X | NA | NA | X | NA | NA | X | NA |
| Bin_10_2-contigs | 8793166 | 32.5 | 3.61 | Eukaryota | 0.016 | 0.006 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_100 | 1400511 | 0.0 | 0.00 | Bacteroidetes;Paludibacter | 4.634 | 0.089 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_101 | 3961593 | 88.7 | 4.22 | Deltaproteobacteria;Desulfobacteraceae | 0.411 | 0.026 | NA | X | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA | X | NA |
| bin_102 | 3062052 | 71.8 | 1.41 | Deltaproteobacteria;Desulfobulbaceae | 0.570 | 0.030 | NA | X | NA | NA | NA | NA | NA | X | X | NA | X | X | NA | X | NA |
| bin_103 | 1266519 | 0.0 | 0.00 | Bacteria | 0.569 | 0.023 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA | NA | NA |
| bin_105 | 4024241 | 70.4 | 1.41 | Bacteria | 4.096 | 0.053 | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA | NA | X | NA |
| bin_106 | 2418005 | 0.0 | 0.00 | Betaproteobacteria;Rhodoferax | 3.775 | 0.077 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X |
| bin_111 | 637507 | 0.0 | 0.00 | Betaproteobacteria | 1.845 | 0.036 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | X | NA |
| bin_112 | 2800085 | 64.8 | 4.22 | Bacteroidetes;Paludibacter | 3.580 | 0.105 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_113 | 823305 | 0.0 | 0.00 | Bacteroidetes | 0.256 | 0.030 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_114 | 1033036 | 0.0 | 0.00 | Betaproteobacteria;Rhodoferax | 0.725 | 0.021 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_117 | 1688616 | 63.4 | 0.00 | Bacteroidetes | 1.426 | 0.058 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_118 | 3917186 | 98.6 | 1.41 | Bacteria | 0.771 | 3.622 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | NA |
| bin_120 | 2823555 | 85.9 | 2.82 | Chloroflexi | 1.015 | 2.731 | NA | NA | NA | NA | X | X | NA | X | X | NA | X | NA | NA | NA | NA |
| bin_122 | 3455847 | 74.6 | 2.82 | Betaproteobacteria;Candidatus Accumulibacter | 0.787 | 0.014 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_123 | 2116432 | 38.0 | 2.82 | Chloroflexi | 1.221 | 0.026 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_124 | 1128359 | 36.6 | 0.00 | Bacteroidetes | 0.082 | 0.025 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_127 | 3724154 | 70.4 | 2.82 | Betaproteobacteria | 1.173 | 0.046 | X | NA | NA | NA | NA | NA | X | NA | X | NA | X | X | X | X | NA |
| bin_131 | 1613140 | 97.2 | 0.00 | Betaproteobacteria;Collimonas | 0.028 | 0.014 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | NA |
| bin_132 | 4302557 | 84.5 | 1.41 | Bacteroidetes;Paludibacter | 1.567 | 2.407 | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA | NA | NA | NA |
| bin_134 | 1818317 | 23.9 | 2.82 | Spirochaetes | 0.293 | 0.025 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA |
| bin_141 | 3352447 | 49.3 | 1.41 | Chloroflexi;Anaerolinea | 0.503 | 0.022 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | NA |
| bin_143 | 4277160 | 95.8 | 11.27 | Cyanobacteria;Pseudanabaena | 0.461 | 0.070 | X | NA | X | X | NA | NA | NA | X | NA | NA | X | NA | NA | X | NA |
| bin_144 | 1077631 | 38.0 | 4.22 | Betaproteobacteria;Sideroxydans | 0.432 | 0.614 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA | X | NA |
| bin_145_29 | 998016 | 0.0 | 0.00 | Deltaproteobacteria | 0.129 | 0.020 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA |
| bin_146 | 2304693 | 0.0 | 0.00 | Bacteria | 0.137 | 0.017 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_149 | 1412910 | 56.3 | 4.22 | Gammaproteobacteria;Methylovulum | 0.053 | 4.961 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_151 | 2184168 | 76.1 | 1.41 | Betaproteobacteria | 1.821 | 0.047 | X | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | X | X | NA |
| bin_153 | 2962889 | 71.8 | 8.45 | Bacteroidetes | 0.167 | 39.290 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_154 | 820620 | 22.5 | 1.41 | Chloroflexi;Anaerolinea | 0.725 | 0.053 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_155 | 548848 | 50.7 | 1.41 | Verrucomicrobia | 0.511 | 0.026 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_156 | 3085822 | 63.4 | 0.00 | Bacteria | 1.196 | 0.130 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_157 | 163623 | 0.0 | 0.00 | Bacteria | 0.045 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_158 | 2018828 | 77.5 | 1.41 | Gammaproteobacteria;Thiotrichaceae | 0.240 | 13.054 | X | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | X | NA | NA |
| bin_159 | 900344 | 0.0 | 0.00 | Fibrobacteres | 0.599 | 0.026 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_16 | 1665686 | 0.0 | 0.00 | Spirochaetes | 0.814 | 0.032 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_160 | 1482139 | 43.7 | 0.00 | Bacteroidetes | 0.757 | 0.069 | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | X | NA | NA | NA | NA |
| bin_162 | 1282009 | 21.1 | 4.22 | Spirochaetes | 0.865 | 0.036 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA |
| bin_164 | 948971 | 0.0 | 0.00 | Gammaproteobacteria | 2.043 | 0.296 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X |
| bin_165 | 450480 | 0.0 | 0.00 | Verrucomicrobia | 0.921 | 0.026 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA | X | NA |
| bin_167 | 569153 | 0.0 | 0.00 | Betaproteobacteria;Rhodoferax | 1.387 | 0.225 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | X | NA |
| bin_168 | 157396 | 0.0 | 0.00 | Bacteria | 0.036 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_169 | 2672817 | 54.9 | 0.00 | Bacteroidetes;Draconibacterium | 0.488 | 0.157 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_170 | 2433296 | 62.0 | 5.63 | Deltaproteobacteria;Desulfobulbaceae | 0.702 | 0.030 | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | X | NA | X | NA |
| bin_172 | 1252337 | 0.0 | 0.00 | Spirochaetes | 0.858 | 0.030 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_176 | 945589 | 0.0 | 0.00 | Bacteroidetes;Draconibacterium | 0.663 | 0.093 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | NA |
| bin_178 | 371388 | 0.0 | 0.00 | Bacteroidetes | 0.246 | 0.035 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_179 | 919484 | 0.0 | 0.00 | Chloroflexi;Anaerolinea | 0.786 | 0.043 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_180 | 527123 | 0.0 | 0.00 | Cyanobacteria;Oscillatoriales | 0.729 | 0.046 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_182 | 2968070 | 88.7 | 1.41 | Bacteria | 0.061 | 3.837 | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | NA | NA | X | NA |
| bin_187 | 4444501 | 62.0 | 1.41 | Chloroflexi | 0.430 | 35.357 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_188 | 687171 | 0.0 | 0.00 | Gammaproteobacteria;Thioploca | 2.995 | 0.099 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA |
| bin_190 | 406092 | 0.0 | 0.00 | Chloroflexi;Anaerolinea | 0.533 | 0.036 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_193 | 2240036 | 67.6 | 1.41 | Chlorobi | 0.106 | 0.889 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_194 | 329682 | 29.6 | 1.41 | Firmicutes - Clostridia | 0.261 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_197 | 1178942 | 0.0 | 0.00 | Bacteroidetes;Draconibacterium | 0.327 | 0.085 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA |
| bin_199 | 3969302 | 90.1 | 7.04 | Spirochaetes | 1.314 | 0.726 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_2 | 13858755 | 21.7 | 25.30 | Eukaryota | 0.027 | 0.372 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA |
| bin_200 | 218076 | 28.2 | 0.00 | Betaproteobacteria | 1.728 | 0.052 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_201 | 437961 | 0.0 | 0.00 | Spirochaetes | 0.405 | 0.034 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_202 | 3626904 | 32.4 | 2.82 | Bacteroidetes | 0.648 | 0.122 | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | X | NA | NA | NA | NA |
| bin_204 | 1256801 | 45.1 | 1.41 | Deltaproteobacteria;Desulfobacteraceae | 6.418 | 0.205 | NA | X | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA | X | NA |
| bin_207 | 2366644 | 93.0 | 0.00 | Bacteroidetes | 0.310 | 3.833 | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA | NA | X | NA |
| bin_208 | 1036760 | 71.8 | 0.00 | Alphaproteobacteria;Rickettsia | 0.035 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_209 | 3253134 | 91.5 | 2.82 | Deltaproteobacteria;Halobacteriovorax | 0.090 | 0.773 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA | NA | NA |
| bin_212 | 2393843 | 83.1 | 5.63 | Bacteria | 1.181 | 0.765 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_219 | 976721 | 0.0 | 0.00 | Spirochaetes | 0.240 | 0.019 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_220 | 1483107 | 19.7 | 0.00 | Bacteria | 0.676 | 0.025 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_224 | 1116623 | 35.2 | 0.00 | Bacteroidetes | 0.380 | 0.034 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA |
| bin_227 | 2930134 | 76.1 | 0.00 | Bacteroidetes;Flavobacterium | 0.944 | 0.037 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_228 | 6581157 | 94.4 | 4.22 | Bacteroidetes | 0.138 | 0.014 | NA | NA | NA | NA | NA | NA | X | X | X | NA | X | X | NA | X | NA |
| bin_229 | 4595121 | 87.3 | 1.41 | Betaproteobacteria;Rhodoferax | 0.481 | 0.257 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA |
| bin_23 | 347815 | 0.0 | 0.00 | Bacteroidetes | 0.913 | 0.030 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_232 | 476289 | 0.0 | 0.00 | Chloroflexi;Anaerolinea | 0.157 | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA | X | NA |
| bin_233 | 797513 | 53.5 | 0.00 | Epsilonproteobacteria;Sulfurospirillum | 2.241 | 0.144 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA | NA | NA |
| bin_234 | 750004 | 0.0 | 0.00 | Gammaproteobacteria;Thioploca | 0.130 | NA | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_235_243 | 5709010 | 91.5 | 42.25 | Cyanobacteria;Planktothrix | 28.572 | 1.538 | X | NA | X | X | NA | NA | NA | X | NA | NA | X | NA | NA | X | NA |
| bin_239 | 2545173 | 69.0 | 1.41 | Bacteroidetes | 0.291 | 0.028 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_242 | 788631 | 0.0 | 0.00 | Bacteroidetes;Flavobacterium | 0.310 | 0.025 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_246 | 2662737 | 69.0 | 2.82 | Betaproteobacteria;Rhodoferax | 1.457 | 0.044 | X | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA | NA | NA |
| bin_247 | 902565 | 0.0 | 0.00 | Gammaproteobacteria;Thioploca | 2.753 | 0.073 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_25 | 317211 | 31.0 | 0.00 | Epsilonproteobacteria | 0.463 | 0.146 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_250 | 1008733 | 53.5 | 1.41 | Bacteria;Vampirococcus | 0.154 | 0.019 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA |
| bin_251 | 2806768 | 43.7 | 1.41 | Spirochaetes | 1.103 | 0.033 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_256 | 1128073 | 22.5 | 1.41 | Cyanobacteria;Spirulina | 1.176 | 0.982 | X | NA | X | X | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_257 | 194932 | 0.0 | 0.00 | Spirochaetes | 0.328 | 0.031 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_26 | 3688401 | 97.2 | 4.22 | Deltaproteobacteria;Desulfobacula | 0.201 | 0.034 | NA | X | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA | X | NA |
| bin_261 | 54079 | 0.0 | 0.00 | Bacteroidetes | 0.072 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_262 | 629939 | 46.5 | 1.41 | Tenericutes | 0.091 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_28 | 4812335 | 98.6 | 1.41 | Bacteroidetes | 1.224 | 3.040 | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | X | NA | NA | X | NA |
| bin_3 | 4300737 | 62.0 | 1.41 | Bacteroidetes | 0.358 | 0.022 | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | X | NA | NA | X | NA |
| Bin_3_1 | 23570043 | 87.3 | 254.93 | Unknown | 0.309 | 20.589 | X | NA | X | X | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| Bin_3_3 | 19802335 | 90.1 | 236.62 | Unknown | 6.192 | 17.767 | X | NA | X | X | NA | NA | NA | NA | NA | NA | X | X | NA | X | X |
| bin_33 | 3200533 | 98.6 | 2.82 | Bacteroidetes | 0.328 | 0.372 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_35 | 666513 | 0.0 | 0.00 | Gammaproteobacteria;Thioploca | 13.760 | 0.216 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_37 | 595635 | 0.0 | 0.00 | Gammaproteobacteria | 5.242 | 0.265 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA | NA | NA |
| bin_38 | 1189669 | 0.0 | 0.00 | Betaproteobacteria;Rhodoferax | 2.359 | 0.049 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| Bin_4_1-contigs | 4187395 | 90.1 | 90.14 | Betaproteobacteria;Rhodoferax | 7.217 | 1.558 | NA | NA | NA | NA | X | X | NA | NA | X | NA | X | X | X | X | X |
| Bin_4_3_4-contigs | 3046083 | 67.6 | 1.41 | Betaproteobacteria;Sulfuritalea | 0.215 | 0.649 | X | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | X | X | NA |
| Bin_4_4-contigs | 3519382 | 93.0 | 1.41 | Betaproteobacteria;Hydrogenophaga | 10.925 | 0.238 | X | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | X | X | X |
| bin_43 | 1290979 | 56.3 | 1.41 | Chloroflexi;Anaerolinea | 0.221 | 0.064 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA | X | NA |
| bin_44 | 2317582 | 45.1 | 0.00 | Betaproteobacteria;Rhodoferax | 1.299 | 0.143 | X | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | X | NA | NA |
| bin_45 | 2731051 | 95.8 | 2.82 | Gammaproteobacteria;Methylococcaceae | 0.294 | 0.100 | NA | NA | NA | NA | NA | NA | NA | X | X | X | X | NA | NA | X | X |
| bin_46 | 2729705 | 66.2 | 5.63 | Betaproteobacteria;Rhodoferax | 1.997 | 0.047 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA |
| bin_47 | 3407323 | 53.5 | 1.41 | Bacteria | 0.190 | 0.021 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_49 | 2217859 | 95.8 | 0.00 | Epsilonproteobacteria;Sulfuricurvum | 1.370 | 0.121 | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | NA | NA | X | NA |
| bin_5 | 2954443 | 77.5 | 0.00 | Deltaproteobacteria | 0.343 | 0.023 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | X |
| bin_50 | 3858105 | 87.3 | 8.45 | Bacteria | 1.064 | 0.394 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_51 | 1580267 | 0.0 | 0.00 | Bacteria | 0.547 | 0.162 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | X | NA | NA | NA |
| bin_54 | 571641 | 47.9 | 1.41 | Bacteroidetes;Bernardetia | 0.759 | 84.010 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_57 | 3922016 | 97.2 | 1.41 | Bacteroidetes | 0.231 | 2.995 | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | X | X | NA | NA | NA |
| bin_6 | 1947632 | 26.8 | 0.00 | Deltaproteobacteria;Desulfomicrobium | 1.243 | 1.378 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA | NA | NA |
| Bin_6_3-contigs | 2205377 | 98.6 | 1.41 | Epsilonproteobacteria;Sulfurimonas | 0.415 | 0.017 | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | NA | NA | NA | NA |
| Bin_6_9-contigs | 1997449 | 97.2 | 0.00 | Epsilonproteobacteria;Arcobacter | 6.999 | 0.107 | NA | NA | NA | NA | NA | NA | NA | X | X | NA | X | X | NA | NA | NA |
| bin_61 | 1160311 | 21.1 | 0.00 | Deltaproteobacteria;Desulfocapsa | 1.409 | 0.067 | NA | NA | NA | NA | NA | NA | NA | X | X | NA | NA | X | NA | NA | NA |
| bin_64 | 232602 | 0.0 | 0.00 | Bacteria;Silvanigrellales | 0.016 | 0.040 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_65 | 434310 | 0.0 | 0.00 | Deltaproteobacteria;Bdellovibrio | 0.067 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_66 | 2006576 | 50.7 | 0.00 | Verrucomicrobia | 0.130 | 0.015 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA | X | NA |
| bin_67 | 665089 | 21.1 | 0.00 | Epsilonproteobacteria | 1.230 | 63.479 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_69 | 3315494 | 91.5 | 4.22 | Bacteroidetes | 0.691 | 0.043 | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | X | NA | NA | NA | NA |
| Bin_7_3-contigs | 3971796 | 85.9 | 1.41 | Bacteria | 5.295 | 0.536 | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA | NA | X | NA |
| Bin_7_6-contigs | 1954091 | 29.6 | 0.00 | Betaproteobacteria;Methylibium | 1.377 | 0.025 | NA | NA | NA | NA | X | X | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_70 | 2249573 | 70.4 | 0.00 | Betaproteobacteria;Hydrogenophaga | 4.677 | 0.109 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA |
| bin_72 | 1332738 | 45.1 | 0.00 | Verrucomicrobia | 0.421 | 0.046 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA | NA | NA |
| bin_73 | 2387643 | 33.8 | 4.22 | Gammaproteobacteria | 1.639 | 0.095 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA | NA | NA |
| bin_75 | 602309 | 46.5 | 0.00 | Bacteroidetes;Paludibacter | 2.128 | 0.063 | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA | NA | NA | NA |
| bin_77 | 427799 | 0.0 | 0.00 | Betaproteobacteria;Candidatus Accumulibacter | 1.052 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_78 | 3197050 | 46.5 | 5.63 | Gammaproteobacteria | 1.011 | 0.041 | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA | NA | NA | X | X |
| bin_79 | 575930 | 40.8 | 0.00 | Unknown | 0.045 | 2.679 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_8 | 4061672 | 63.4 | 1.41 | Chloroflexi;Anaerolinea | 0.340 | 0.015 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | X | NA | NA | X | NA |
| bin_83 | 2395034 | 67.6 | 4.22 | Deltaproteobacteria;Desulfobacteraceae | 0.946 | 2.367 | NA | X | NA | NA | NA | NA | NA | NA | X | NA | X | X | NA | X | NA |
| bin_85 | 574286 | 0.0 | 0.00 | Deltaproteobacteria;Desulfocapsa | 2.217 | 15.581 | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA | X | NA |
| bin_86 | 3921580 | 60.6 | 1.41 | Firmicutes - Clostridia | 0.263 | 0.032 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA |
| bin_87 | 720606 | 42.3 | 0.00 | Bacteroidetes | 1.204 | 4.460 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_88 | 2317404 | 80.3 | 2.82 | Bacteroidetes | 0.356 | 0.036 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_89 | 3062395 | 70.4 | 2.82 | Verrucomicrobia;Akkermansia | 0.389 | 5.748 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_9 | 4643096 | 100.0 | 2.82 | Bacteroidetes | 0.761 | 0.036 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_90 | 1629916 | 43.7 | 0.00 | Deltaproteobacteria | 0.792 | 0.034 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_91 | 3172373 | 80.3 | 0.00 | Betaproteobacteria | 1.995 | 0.056 | X | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
| bin_92 | 3783221 | 87.3 | 1.41 | Bacteroidetes | 0.401 | 0.043 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA |
| bin_94 | 501389 | 0.0 | 0.00 | Epsilonproteobacteria;Sulfurospirillum | 1.069 | 0.074 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | NA | NA |
| bin_96 | 339985 | 0.0 | 0.00 | Bacteroidetes;Flavobacterium | 9.985 | 0.237 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| bin_99 | 540621 | 0.0 | 0.00 | Gammaproteobacteria | 0.427 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | X | NA | NA | X | NA |
Phormidium is an abundant and transcriptionally active member of the photosynthetic community. This cyanobacterial MAG is highly covered in the metagenome and metatranscriptomic samples (Supplemental Figure 1). Lots of metatranscriptomic reads mapped to Phormidium genes, notably those belonging to photosynthesis and autotrophy (Figure 2 and Figure 6). Variants of psbA optimized for different redox conditions are present in the Phormidium genome and differentially active (Figure 4).
I observed that Phormidium was transcribing sulfide quinone reductase (sqr) genes in day and night (Figure 4). There was higher relative expression of sqrII, the type putatively involved in sulfide detoxification, compared to sqrI, the type putatively involved in anoxygenic photosynthesis based on phylogeny. The expression patterns of sqrI are similar to those of photosystem I genes psaL and psaX (Supplemental Figure 5), suggesting that sqrI expression is coupled with operation of photosystem I (aka, evidence for anoxygenic photosynthesis using sulfide).
Planktothrix and Pseudanabaena are less abundant, maybe functionally distinct, cyanobacteria in the community. We have good Planktothrix and Pseudanabaena MAGs (Supplemental Table 2), and like Phormidium they have different versions of the psbA gene. Phormidium and Pseudanabaena have variants for no oxygen evolution (psbA2), which Planktothrix does not have. Yet we observed activity in the metatranscriptomic data of only the versions transcribed for low-oxygen (psbA3) or typical redox (psbA4) conditions (Figures 2 and 3). Further, neither of these cyanobacterial MAGs were actively transcribing any of their sqr genes (Figure 4) (or maybe Phormidium was swamping out the metatranscriptome).
Interestingly, Pseudanabaena has a type IV sqr gene that is uncommonly observed in cyanobacteria. It was first identified in Geitlerinema sp. PCC9228 isolated from a hypersaline lake that experiences high sulfide concentrations, but Geitlerinema uses its type I sqr for anoxygenic photosynthesis (Grim and Dick, 2016). Another cyanobacterium, Leptolyngbya sp. strain hensonii has only a type IV sqr for anoxygenic photosynthesis (Dick, Grim, and Klatt, 2018)(Hamilton et al., 2018).
Are Phormidium and sulfur oxidizing bacteria taking on the lion’s share of consuming/detoxifying sulfide? If so, that could potentially open geochemical space for the survival of other cyanobacteria (such as Planktothrix) that may be more sensitive to variable sulfide.
Bacillariophyte diatoms are abundant and elusive members of the mat. Take with a grain of salt, since my expertise is not in eukaryote genome reconstruction and exploration, I saw lots of reads and a good portion of the metagenome recruiting to two putative diatom MAGs (Supplemental Figure 3). Diatom photosynthesis is active in the mat (Figure 2 and Figure 6). However, unlike cyanobacteria, diatoms do not have variants of psbA for different oxygen/redox conditions. Given the sulfide concentrations in the mat, and potential for constant sulfide exposure from sulfate reducing bacteria, these diatoms are making it work.
Sulfur cyclers are influential members of the MIS mat. We have a handful of good-quality MAGs that are putative sulfate reducers, based on the presence of the dsrA gene (Figure 1, Figure 5, Supplemental Figure 7, and Supplemental Table 2). There is some activity of the Wood-Ljungdahl Pathway of autotrophy (Figure 6).
Sadly we did not get such great sulfur oxidizing bacterial MAGs (Figure 1 and Supplemental Table 2). Many of the rdsrA genes observed in the metatranscriptomic data, were on contigs that could not be binned (Figure 5).