Table of contents

  1. Overview
  2. Analysis details
  3. Results
  1. Conclusion
  2. References

Overview

This document presents the R scripts and analyses to generate the figures and tables in the article, “Omics-inferred partitioning and expression of diverse biogeochemical functions in a low-O2 cyanobacterial mat community”.

Analysis details

Sequences from this study are available from NCBI under BioProject no. PRJNA72255. Reads from all 15 metagenomes and 6 metatranscriptomes are available in NCBI’s Sequence Read Archive (Table S1). Accession numbers for Metagenome-Assembled-Genome Bins (MAGs) that passed NCBI quality filtering are provided in Table S2. Gene calling and functional annotation was performed by the Joint Genome Institute’s Integrated Microbial Genomes Expert Review.

I used CONCOCT via anvi’o and MetaBat to generate MAGs from the metagenome. I refined some MAGs in anvi’o, notably the cyanobacterial ones.

I used the python script “HTSeq.scripts.count” from HTSeq to stringently recruit transcripts to genes.

For the purposes of this document, the data have been processed ahead of time so that composite files can be imported and run through scripts. Please see code comments for how to process the raw data from IMG.

Results

Figure 1.

Let’s take a look at the data sourcing this figure.

Summary of functions observed in MAGs
MAG Function activity value Metabolism Taxonomy Phylum Organism
Bin_1 Autotrophy (Rubisco) Both 1 C metabolism Cyanobacteria;Phormidium Cyanobacteria Phormidium (Bin_1)
Bin_1 Nitrogen fixation (nifH+D/K) Inactive 1 N metabolism Cyanobacteria;Phormidium Cyanobacteria Phormidium (Bin_1)
Bin_1 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Cyanobacteria;Phormidium Cyanobacteria Phormidium (Bin_1)
Bin_1 Photosystem I (psaA) Both 1 OP Cyanobacteria;Phormidium Cyanobacteria Phormidium (Bin_1)
Bin_1 Photosystem II (psbA) Both 1 OP Cyanobacteria;Phormidium Cyanobacteria Phormidium (Bin_1)
Bin_1 Sulfite oxidation (aprA) Both 1 S cycling Cyanobacteria;Phormidium Cyanobacteria Phormidium (Bin_1)
bin_101 Autotrophy WL Pathway (acsB) Day 1 C metabolism Deltaproteobacteria;Desulfobacteraceae Deltaproteobacteria Desulfobacteraceae (bin_101)
bin_101 H2 oxidation (hupL/hydB) Night 1 Oxidative pathways Deltaproteobacteria;Desulfobacteraceae Deltaproteobacteria Desulfobacteraceae (bin_101)
bin_101 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Deltaproteobacteria;Desulfobacteraceae Deltaproteobacteria Desulfobacteraceae (bin_101)
bin_101 S reduction/oxidation (dsrA/rdsrA) Both 1 S cycling Deltaproteobacteria;Desulfobacteraceae Deltaproteobacteria Desulfobacteraceae (bin_101)
bin_101 Sulfite oxidation (aprA) Both 1 S cycling Deltaproteobacteria;Desulfobacteraceae Deltaproteobacteria Desulfobacteraceae (bin_101)
bin_118 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Bacteria Bacteria Bacteria (bin_118)
bin_118 S reduction/oxidation (dsrA/rdsrA) Inactive 1 S cycling Bacteria Bacteria Bacteria (bin_118)
bin_118 Sulfite oxidation (aprA) Inactive 1 S cycling Bacteria Bacteria Bacteria (bin_118)
bin_122 Autotrophy (Rubisco) Inactive 1 C metabolism Betaproteobacteria;Candidatus Accumulibacter Betaproteobacteria Candidatus Accumulibacter (bin_122)
bin_122 Oxygen respiration (cbo3, cbb3, cox1, cb1) Day 1 Oxidative pathways Betaproteobacteria;Candidatus Accumulibacter Betaproteobacteria Candidatus Accumulibacter (bin_122)
bin_127 Autotrophy (Rubisco) Inactive 1 C metabolism Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_127)
bin_127 Denitrification (nirK) Inactive 1 N metabolism Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_127)
bin_127 H2 oxidation (hupL/hydB) Both 1 Oxidative pathways Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_127)
bin_127 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_127)
bin_127 S reduction/oxidation (dsrA/rdsrA) Night 1 S cycling Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_127)
bin_127 Sulfide redox (fcc) Both 1 S cycling Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_127)
bin_127 Sulfite oxidation (aprA) Night 1 S cycling Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_127)
bin_131 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Betaproteobacteria;Collimonas Betaproteobacteria Collimonas (bin_131)
bin_131 S reduction/oxidation (dsrA/rdsrA) Inactive 1 S cycling Betaproteobacteria;Collimonas Betaproteobacteria Collimonas (bin_131)
bin_131 Sulfite oxidation (aprA) Inactive 1 S cycling Betaproteobacteria;Collimonas Betaproteobacteria Collimonas (bin_131)
bin_132 Nitrogen fixation (nifH+D/K) Day 1 N metabolism Bacteroidetes;Paludibacter Bacteroidetes Paludibacter (bin_132)
bin_132 Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Bacteroidetes;Paludibacter Bacteroidetes Paludibacter (bin_132)
bin_143 Autotrophy (Rubisco) Both 1 C metabolism Cyanobacteria;Pseudanabaena Cyanobacteria Pseudanabaena (bin_143)
bin_143 Nitrogen fixation (nifH+D/K) Inactive 1 N metabolism Cyanobacteria;Pseudanabaena Cyanobacteria Pseudanabaena (bin_143)
bin_143 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Cyanobacteria;Pseudanabaena Cyanobacteria Pseudanabaena (bin_143)
bin_143 Photosystem I (psaA) Both 1 OP Cyanobacteria;Pseudanabaena Cyanobacteria Pseudanabaena (bin_143)
bin_143 Photosystem II (psbA) Night 1 OP Cyanobacteria;Pseudanabaena Cyanobacteria Pseudanabaena (bin_143)
bin_143 Sulfite oxidation (aprA) Inactive 1 S cycling Cyanobacteria;Pseudanabaena Cyanobacteria Pseudanabaena (bin_143)
bin_182 H2 oxidation (hupL/hydB) Inactive 1 Oxidative pathways Bacteria Bacteria Bacteria (bin_182)
bin_182 Nitrogen fixation (nifH+D/K) Day 1 N metabolism Bacteria Bacteria Bacteria (bin_182)
bin_182 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Bacteria Bacteria Bacteria (bin_182)
bin_182 Sulfite oxidation (aprA) Inactive 1 S cycling Bacteria Bacteria Bacteria (bin_182)
bin_199 Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Spirochaetes Spirochaetes Spirochaetes (bin_199)
bin_199 Sulfite oxidation (aprA) Inactive 1 S cycling Spirochaetes Spirochaetes Spirochaetes (bin_199)
bin_207 Nitrogen fixation (nifH+D/K) Inactive 1 N metabolism Bacteroidetes Bacteroidetes Bacteroidetes (bin_207)
bin_207 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_207)
bin_207 Sulfite oxidation (aprA) Inactive 1 S cycling Bacteroidetes Bacteroidetes Bacteroidetes (bin_207)
bin_209 H2 oxidation (hupL/hydB) Inactive 1 Oxidative pathways Deltaproteobacteria;Halobacteriovorax Deltaproteobacteria Halobacteriovorax (bin_209)
bin_209 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Deltaproteobacteria;Halobacteriovorax Deltaproteobacteria Halobacteriovorax (bin_209)
bin_227 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Bacteroidetes;Flavobacterium Bacteroidetes Flavobacterium (bin_227)
bin_228 Denitrification (nirK) Inactive 1 N metabolism Bacteroidetes Bacteroidetes Bacteroidetes (bin_228)
bin_228 H2 oxidation (hupL/hydB) Inactive 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_228)
bin_228 Nitrogen fixation (nifH+D/K) Inactive 1 N metabolism Bacteroidetes Bacteroidetes Bacteroidetes (bin_228)
bin_228 Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_228)
bin_228 S reduction/oxidation (dsrA/rdsrA) Inactive 1 S cycling Bacteroidetes Bacteroidetes Bacteroidetes (bin_228)
bin_228 Sulfite oxidation (aprA) Inactive 1 S cycling Bacteroidetes Bacteroidetes Bacteroidetes (bin_228)
bin_229 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Betaproteobacteria;Rhodoferax Betaproteobacteria Rhodoferax (bin_229)
bin_229 Sulfide redox (fcc) Inactive 1 S cycling Betaproteobacteria;Rhodoferax Betaproteobacteria Rhodoferax (bin_229)
bin_229 Sulfite oxidation (aprA) Inactive 1 S cycling Betaproteobacteria;Rhodoferax Betaproteobacteria Rhodoferax (bin_229)
bin_235_243 Autotrophy (Rubisco) Both 1 C metabolism Cyanobacteria;Planktothrix Cyanobacteria Planktothrix (bin_235_243)
bin_235_243 Nitrogen fixation (nifH+D/K) Both 1 N metabolism Cyanobacteria;Planktothrix Cyanobacteria Planktothrix (bin_235_243)
bin_235_243 Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Cyanobacteria;Planktothrix Cyanobacteria Planktothrix (bin_235_243)
bin_235_243 Photosystem I (psaA) Both 1 OP Cyanobacteria;Planktothrix Cyanobacteria Planktothrix (bin_235_243)
bin_235_243 Photosystem II (psbA) Both 1 OP Cyanobacteria;Planktothrix Cyanobacteria Planktothrix (bin_235_243)
bin_235_243 Sulfite oxidation (aprA) Day 1 S cycling Cyanobacteria;Planktothrix Cyanobacteria Planktothrix (bin_235_243)
bin_256 Autotrophy (Rubisco) Both 1 C metabolism Cyanobacteria;Spirulina Cyanobacteria Spirulina (bin_256)
bin_256 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Cyanobacteria;Spirulina Cyanobacteria Spirulina (bin_256)
bin_256 Photosystem I (psaA) Both 1 OP Cyanobacteria;Spirulina Cyanobacteria Spirulina (bin_256)
bin_256 Photosystem II (psbA) Both 1 OP Cyanobacteria;Spirulina Cyanobacteria Spirulina (bin_256)
bin_256 Sulfite oxidation (aprA) Inactive 1 S cycling Cyanobacteria;Spirulina Cyanobacteria Spirulina (bin_256)
bin_26 Autotrophy WL Pathway (acsB) Both 1 C metabolism Deltaproteobacteria;Desulfobacula Deltaproteobacteria Desulfobacula (bin_26)
bin_26 H2 oxidation (hupL/hydB) Day 1 Oxidative pathways Deltaproteobacteria;Desulfobacula Deltaproteobacteria Desulfobacula (bin_26)
bin_26 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Deltaproteobacteria;Desulfobacula Deltaproteobacteria Desulfobacula (bin_26)
bin_26 S reduction/oxidation (dsrA/rdsrA) Both 1 S cycling Deltaproteobacteria;Desulfobacula Deltaproteobacteria Desulfobacula (bin_26)
bin_26 Sulfite oxidation (aprA) Inactive 1 S cycling Deltaproteobacteria;Desulfobacula Deltaproteobacteria Desulfobacula (bin_26)
bin_28 Denitrification (nirK) Inactive 1 N metabolism Bacteroidetes Bacteroidetes Bacteroidetes (bin_28)
bin_28 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_28)
bin_28 Sulfite oxidation (aprA) Day 1 S cycling Bacteroidetes Bacteroidetes Bacteroidetes (bin_28)
Bin_3_1 Autotrophy (Rubisco) Night 1 C metabolism Unknown Unknown Bacillariophyte 1 (Bin_3_1)
Bin_3_1 Oxygen respiration (cbo3, cbb3, cox1, cb1) Day 1 Oxidative pathways Unknown Unknown Bacillariophyte 1 (Bin_3_1)
Bin_3_1 Photosystem I (psaA) Night 1 OP Unknown Unknown Bacillariophyte 1 (Bin_3_1)
Bin_3_1 Photosystem II (psbA) Both 1 OP Unknown Unknown Bacillariophyte 1 (Bin_3_1)
Bin_3_1 Sulfite oxidation (aprA) Inactive 1 S cycling Unknown Unknown Bacillariophyte 1 (Bin_3_1)
Bin_3_3 Autotrophy (Rubisco) Both 1 C metabolism Unknown Unknown Bacillariophyte 2 (Bin_3_3)
Bin_3_3 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Unknown Unknown Bacillariophyte 2 (Bin_3_3)
Bin_3_3 Photosystem I (psaA) Both 1 OP Unknown Unknown Bacillariophyte 2 (Bin_3_3)
Bin_3_3 Photosystem II (psbA) Both 1 OP Unknown Unknown Bacillariophyte 2 (Bin_3_3)
Bin_3_3 S reduction/oxidation (dsrA/rdsrA) Inactive 1 S cycling Unknown Unknown Bacillariophyte 2 (Bin_3_3)
Bin_3_3 Sulfite oxidation (aprA) Inactive 1 S cycling Unknown Unknown Bacillariophyte 2 (Bin_3_3)
Bin_3_3 Thiosulfate oxidation (soxA) Inactive 1 S cycling Unknown Unknown Bacillariophyte 2 (Bin_3_3)
bin_33 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_33)
Bin_4_4-contigs Autotrophy (Rubisco) Day 1 C metabolism Betaproteobacteria;Hydrogenophaga Betaproteobacteria Hydrogenophaga (Bin_4_4-contigs)
Bin_4_4-contigs H2 oxidation (hupL/hydB) Day 1 Oxidative pathways Betaproteobacteria;Hydrogenophaga Betaproteobacteria Hydrogenophaga (Bin_4_4-contigs)
Bin_4_4-contigs Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Betaproteobacteria;Hydrogenophaga Betaproteobacteria Hydrogenophaga (Bin_4_4-contigs)
Bin_4_4-contigs Sulfide redox (fcc) Night 1 S cycling Betaproteobacteria;Hydrogenophaga Betaproteobacteria Hydrogenophaga (Bin_4_4-contigs)
Bin_4_4-contigs Sulfite oxidation (aprA) Inactive 1 S cycling Betaproteobacteria;Hydrogenophaga Betaproteobacteria Hydrogenophaga (Bin_4_4-contigs)
Bin_4_4-contigs Thiosulfate oxidation (soxA) Inactive 1 S cycling Betaproteobacteria;Hydrogenophaga Betaproteobacteria Hydrogenophaga (Bin_4_4-contigs)
bin_45 H2 oxidation (hupL/hydB) Inactive 1 Oxidative pathways Gammaproteobacteria;Methylococcaceae Gammaproteobacteria Methylococcaceae (bin_45)
bin_45 Methane oxidation (mmoC) Inactive 1 Oxidative pathways Gammaproteobacteria;Methylococcaceae Gammaproteobacteria Methylococcaceae (bin_45)
bin_45 Nitrogen fixation (nifH+D/K) Night 1 N metabolism Gammaproteobacteria;Methylococcaceae Gammaproteobacteria Methylococcaceae (bin_45)
bin_45 Oxygen respiration (cbo3, cbb3, cox1, cb1) Inactive 1 Oxidative pathways Gammaproteobacteria;Methylococcaceae Gammaproteobacteria Methylococcaceae (bin_45)
bin_45 Sulfite oxidation (aprA) Inactive 1 S cycling Gammaproteobacteria;Methylococcaceae Gammaproteobacteria Methylococcaceae (bin_45)
bin_45 Thiosulfate oxidation (soxA) Inactive 1 S cycling Gammaproteobacteria;Methylococcaceae Gammaproteobacteria Methylococcaceae (bin_45)
bin_49 H2 oxidation (hupL/hydB) Night 1 Oxidative pathways Epsilonproteobacteria;Sulfuricurvum Epsilonproteobacteria Sulfuricurvum (bin_49)
bin_49 Nitrogen fixation (nifH+D/K) Both 1 N metabolism Epsilonproteobacteria;Sulfuricurvum Epsilonproteobacteria Sulfuricurvum (bin_49)
bin_49 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Epsilonproteobacteria;Sulfuricurvum Epsilonproteobacteria Sulfuricurvum (bin_49)
bin_49 Sulfite oxidation (aprA) Inactive 1 S cycling Epsilonproteobacteria;Sulfuricurvum Epsilonproteobacteria Sulfuricurvum (bin_49)
bin_50 Sulfite oxidation (aprA) Inactive 1 S cycling Bacteria Bacteria Bacteria (bin_50)
bin_57 Denitrification (nirK) Inactive 1 N metabolism Bacteroidetes Bacteroidetes Bacteroidetes (bin_57)
bin_57 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_57)
bin_57 S reduction/oxidation (dsrA/rdsrA) Inactive 1 S cycling Bacteroidetes Bacteroidetes Bacteroidetes (bin_57)
Bin_6_3-contigs H2 oxidation (hupL/hydB) Night 1 Oxidative pathways Epsilonproteobacteria;Sulfurimonas Epsilonproteobacteria Sulfurimonas (Bin_6_3-contigs)
Bin_6_3-contigs Nitrogen fixation (nifH+D/K) Day 1 N metabolism Epsilonproteobacteria;Sulfurimonas Epsilonproteobacteria Sulfurimonas (Bin_6_3-contigs)
Bin_6_3-contigs Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Epsilonproteobacteria;Sulfurimonas Epsilonproteobacteria Sulfurimonas (Bin_6_3-contigs)
Bin_6_9-contigs H2 oxidation (hupL/hydB) Both 1 Oxidative pathways Epsilonproteobacteria;Arcobacter Epsilonproteobacteria Arcobacter (Bin_6_9-contigs)
Bin_6_9-contigs Nitrogen fixation (nifH+D/K) Both 1 N metabolism Epsilonproteobacteria;Arcobacter Epsilonproteobacteria Arcobacter (Bin_6_9-contigs)
Bin_6_9-contigs Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Epsilonproteobacteria;Arcobacter Epsilonproteobacteria Arcobacter (Bin_6_9-contigs)
Bin_6_9-contigs S reduction/oxidation (dsrA/rdsrA) Inactive 1 S cycling Epsilonproteobacteria;Arcobacter Epsilonproteobacteria Arcobacter (Bin_6_9-contigs)
bin_69 Denitrification (nirK) Inactive 1 N metabolism Bacteroidetes Bacteroidetes Bacteroidetes (bin_69)
bin_69 Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_69)
Bin_7_3-contigs Nitrogen fixation (nifH+D/K) Inactive 1 N metabolism Bacteria Bacteria Bacteria (Bin_7_3-contigs)
Bin_7_3-contigs Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Bacteria Bacteria Bacteria (Bin_7_3-contigs)
Bin_7_3-contigs Sulfite oxidation (aprA) Inactive 1 S cycling Bacteria Bacteria Bacteria (Bin_7_3-contigs)
bin_9 Oxygen respiration (cbo3, cbb3, cox1, cb1) Night 1 Oxidative pathways Bacteroidetes Bacteroidetes Bacteroidetes (bin_9)
bin_9 Sulfite oxidation (aprA) Inactive 1 S cycling Bacteroidetes Bacteroidetes Bacteroidetes (bin_9)
bin_91 Autotrophy (Rubisco) Inactive 1 C metabolism Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_91)
bin_91 Oxygen respiration (cbo3, cbb3, cox1, cb1) Both 1 Oxidative pathways Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_91)
bin_91 Sulfite oxidation (aprA) Inactive 1 S cycling Betaproteobacteria Betaproteobacteria Betaproteobacteria (bin_91)
bin_92 Sulfite oxidation (aprA) Inactive 1 S cycling Bacteroidetes Bacteroidetes Bacteroidetes (bin_92)

The column descriptions are:

  • MAG: this is the label for each MAG bin extracted from the metagenome. They were arbitrarily assigned by binning software (CONCOCT via anvi’o, or MetaBat), and some were refined through anvi’o as described.
  • Function: this is the metabolic function we are looking for, using the gene(s) in parentheses as the indicator. This becomes the label on the x-axis of the figure.
  • activity: this category indicates in which time period of samples the function was observed to be transcriptionally active. “Day” means that at least one sample (of 3) collected in daytime, had transcripts that recruited to this gene(s). Similarly for “Night”. If observed in at least one day and one night sample, then this field is “Both”. If we saw the gene in the MAG but it was not transcriptionally active, then this field gets “Inactive”.
  • Metabolism: this is a broad category for the metabolic function. This is the variable by which we facet the x-axis of the graph.
  • Taxonomy: this is the “long form” label for taxonomy. But it isn’t really “long form” because I truncated the pipeline-assigned taxonomy to just “phylum (or class);genus”.
  • Phylum: this is the broad taxonomy by which we facet the y-axis of the graph. But mostly, this field is populated by taxonomy not at the phylum level! How misleading, thanks.
  • Organism: this is the genus-level label for each MAG (or most specific taxonomic level, if genus is not available).

So, here is Figure 1: Detection of transcripts from marker genes of key metabolic/biogeochemical processes in MAGs (see Table S2 for details).

Figure 2.

Let’s take a look at the data sourcing this figure.

Activity levels of photosynthetic genes in daytime and nighttime.
Gene Organism label time cds_length accession metric TPM
scaffold_102__MIS_10000103.27 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_100001039 CDS_TPM_bin 16.781
scaffold_102__MIS_10000103.27 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_100001039 CDS_TPM_bin 5.447
scaffold_102__MIS_10000103.27 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_100001039 CDS_TPM_bin 0.100
scaffold_19870__MIS_10019871.23 Planktothrix psaA night 423 3300002026_MIS_100198717 CDS_TPM_bin 3149.629
scaffold_19870__MIS_10019871.23 Planktothrix psaA day 423 3300002026_MIS_100198717 CDS_TPM_bin 2531.983
scaffold_19870__MIS_10019871.23 Planktothrix psaA night 423 3300002026_MIS_100198717 CDS_TPM_bin 3621.759
scaffold_19870__MIS_10019871.23 Planktothrix psaA day 423 3300002026_MIS_100198717 CDS_TPM_bin 6424.368
scaffold_19870__MIS_10019871.23 Planktothrix psaA night 423 3300002026_MIS_100198717 CDS_TPM_bin 3754.636
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_1000265839 CDS_TPM_bin 104.754
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_1000265839 CDS_TPM_bin 225.563
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_1000265839 CDS_TPM_bin 1367.658
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_1000265839 CDS_TPM_bin 332.286
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_1000265839 CDS_TPM_bin 101.898
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_1000265839 CDS_TPM_bin 1865.086
scaffold_334045__MIS_10193787_merged Phormidium psaA night 2184 3300002027_MIS_101937872 CDS_TPM_bin 11868.725
scaffold_334045__MIS_10193787_merged Phormidium psaA night 2184 3300002027_MIS_101937872 CDS_TPM_bin 801.535
scaffold_334045__MIS_10193787_merged Phormidium psaA day 2184 3300002027_MIS_101937872 CDS_TPM_bin 2854.235
scaffold_334045__MIS_10193787_merged Phormidium psaA day 2184 3300002027_MIS_101937872 CDS_TPM_bin 5089.447
scaffold_334045__MIS_10193787_merged Phormidium psaA day 2184 3300002027_MIS_101937872 CDS_TPM_bin 13369.228
scaffold_334045__MIS_10193787_merged Phormidium psaA night 2184 3300002027_MIS_101937872 CDS_TPM_bin 15691.215
scaffold_334215__MIS_1100032.1 Phormidium psaA night 1143 3300002024_MIS_11000321 CDS_TPM_bin 1177.398
scaffold_334215__MIS_1100032.1 Phormidium psaA day 1143 3300002024_MIS_11000321 CDS_TPM_bin 1394.923
scaffold_334215__MIS_1100032.1 Phormidium psaA day 1143 3300002024_MIS_11000321 CDS_TPM_bin 1123.065
scaffold_334215__MIS_1100032.1 Phormidium psaA night 1143 3300002024_MIS_11000321 CDS_TPM_bin 2452.040
scaffold_334215__MIS_1100032.1 Phormidium psaA night 1143 3300002024_MIS_11000321 CDS_TPM_bin 5.959
scaffold_334215__MIS_1100032.1 Phormidium psaA day 1143 3300002024_MIS_11000321 CDS_TPM_bin 1177.762
scaffold_34243__MIS_10034244.13 Phormidium psaA night 1629 3300002026_MIS_100342444 CDS_TPM_bin 287.266
scaffold_34243__MIS_10034244.13 Phormidium psaA night 1629 3300002026_MIS_100342444 CDS_TPM_bin 355.418
scaffold_34243__MIS_10034244.13 Phormidium psaA day 1629 3300002026_MIS_100342444 CDS_TPM_bin 878.035
scaffold_34243__MIS_10034244.13 Phormidium psaA day 1629 3300002026_MIS_100342444 CDS_TPM_bin 897.115
scaffold_34243__MIS_10034244.13 Phormidium psaA night 1629 3300002026_MIS_100342444 CDS_TPM_bin 1107.766
scaffold_34243__MIS_10034244.13 Phormidium psaA day 1629 3300002026_MIS_100342444 CDS_TPM_bin 197.111
scaffold_5889__MIS_10005890.143 Pseudanabaena psaA night 2253 3300002026_MIS_1000589039 CDS_TPM_bin 53.683
scaffold_5889__MIS_10005890.143 Pseudanabaena psaA night 2253 3300002026_MIS_1000589039 CDS_TPM_bin 432.863
scaffold_5889__MIS_10005890.143 Pseudanabaena psaA day 2253 3300002026_MIS_1000589039 CDS_TPM_bin 369.682
scaffold_9511__MIS_10009512_merged Bacillariophyte 1 (Bin_3_1) psaA night 642 3300002026_MIS_1000951211 CDS_TPM_bin 0.100
scaffold_9511__MIS_10009512_merged Bacillariophyte 1 (Bin_3_1) psaA day 642 3300002026_MIS_1000951211 CDS_TPM_bin 0.100
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 day 1095 3300002026_MIS_1001011011 CDS_TPM_bin 595.165
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 night 1095 3300002026_MIS_1001011011 CDS_TPM_bin 149.293
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 night 1095 3300002026_MIS_1001011011 CDS_TPM_bin 393.842
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 day 1095 3300002026_MIS_1001011011 CDS_TPM_bin 303.348
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 night 1095 3300002026_MIS_1001011011 CDS_TPM_bin 441.218
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 day 1095 3300002026_MIS_1001011011 CDS_TPM_bin 631.770
scaffold_3907__MIS_10003908.31 Pseudanabaena psbA_2 day 1074 3300002026_MIS_100039089 CDS_TPM_bin 0.100
scaffold_3907__MIS_10003908.31 Pseudanabaena psbA_2 night 1074 3300002026_MIS_100039089 CDS_TPM_bin 0.100
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 night 1083 3300002026_MIS_100299244 CDS_TPM_bin 3333.413
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 day 1083 3300002026_MIS_100299244 CDS_TPM_bin 2762.249
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 night 1083 3300002026_MIS_100299244 CDS_TPM_bin 9235.113
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 night 1083 3300002026_MIS_100299244 CDS_TPM_bin 8760.529
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 day 1083 3300002026_MIS_100299244 CDS_TPM_bin 4406.388
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 day 1083 3300002026_MIS_100299244 CDS_TPM_bin 5976.568
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 day 1083 3300002026_MIS_100073893 CDS_TPM_bin 1618.276
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 night 1083 3300002026_MIS_100073893 CDS_TPM_bin 4066.183
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 night 1083 3300002026_MIS_100073893 CDS_TPM_bin 8801.911
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 night 1083 3300002026_MIS_100073893 CDS_TPM_bin 3637.076
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 day 1083 3300002026_MIS_100073893 CDS_TPM_bin 2123.204
scaffold_775__MIS_10000776.97 Pseudanabaena psbA_3 night 1083 3300002026_MIS_1000077629 CDS_TPM_bin 900.498
scaffold_775__MIS_10000776.97 Pseudanabaena psbA_3 night 1083 3300002026_MIS_1000077629 CDS_TPM_bin 446.713
scaffold_775__MIS_10000776.97 Pseudanabaena psbA_3 day 1083 3300002026_MIS_1000077629 CDS_TPM_bin 0.100
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 night 450 3300002026_MIS_100155921 CDS_TPM_bin 136.727
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 day 450 3300002026_MIS_100155921 CDS_TPM_bin 72.021
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 day 450 3300002026_MIS_100155921 CDS_TPM_bin 1731.317
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 night 450 3300002026_MIS_100155921 CDS_TPM_bin 2485.111
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 night 450 3300002026_MIS_100155921 CDS_TPM_bin 90.586
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 night 843 3300002027_MIS_101322185 CDS_TPM_bin 5737.633
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 night 843 3300002027_MIS_101322185 CDS_TPM_bin 2954.696
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 day 843 3300002027_MIS_101322185 CDS_TPM_bin 2228.001
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 night 843 3300002027_MIS_101322185 CDS_TPM_bin 6461.596
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 day 843 3300002027_MIS_101322185 CDS_TPM_bin 4525.460
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 day 843 3300002027_MIS_101322185 CDS_TPM_bin 14668.461
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 night 1083 3300002026_MIS_100266613 CDS_TPM_bin 60780.367
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 day 1083 3300002026_MIS_100266613 CDS_TPM_bin 3324.335
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 day 1083 3300002026_MIS_100266613 CDS_TPM_bin 594.755
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 day 1083 3300002026_MIS_100266613 CDS_TPM_bin 10267.115
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 night 1083 3300002026_MIS_100266613 CDS_TPM_bin 6735.751
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 night 1083 3300002026_MIS_100266613 CDS_TPM_bin 59382.425
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 day 726 3300002026_MIS_100267815 CDS_TPM_bin 19422.863
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 day 726 3300002026_MIS_100267815 CDS_TPM_bin 45509.865
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 night 726 3300002026_MIS_100267815 CDS_TPM_bin 150154.271
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 night 726 3300002026_MIS_100267815 CDS_TPM_bin 88582.873
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 night 726 3300002026_MIS_100267815 CDS_TPM_bin 9591.234
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 day 726 3300002026_MIS_100267815 CDS_TPM_bin 2772.554
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 night 963 3300002026_MIS_100299206 CDS_TPM_bin 636911.918
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 day 963 3300002026_MIS_100299206 CDS_TPM_bin 467985.738
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 night 963 3300002026_MIS_100299206 CDS_TPM_bin 497915.112
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 day 963 3300002026_MIS_100299206 CDS_TPM_bin 641085.161
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 day 963 3300002026_MIS_100299206 CDS_TPM_bin 698647.152
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 night 963 3300002026_MIS_100299206 CDS_TPM_bin 494102.406
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 night 843 3300002026_MIS_1000067552 CDS_TPM_bin 45643.053
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 night 843 3300002026_MIS_1000067552 CDS_TPM_bin 11356.641
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 day 843 3300002026_MIS_1000067552 CDS_TPM_bin 71540.755
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 night 843 3300002026_MIS_1000067552 CDS_TPM_bin 19027.887
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 day 843 3300002026_MIS_1000067552 CDS_TPM_bin 19914.704
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 day 843 3300002026_MIS_1000067552 CDS_TPM_bin 3929.964
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 night 345 3300002026_MIS_1000077350 CDS_TPM_bin 142074.341
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 day 345 3300002026_MIS_1000077350 CDS_TPM_bin 68388.639
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 night 345 3300002026_MIS_1000077350 CDS_TPM_bin 40590.185
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 night 345 3300002026_MIS_1000077350 CDS_TPM_bin 36332.847
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 day 345 3300002026_MIS_1000077350 CDS_TPM_bin 8859.708
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 day 345 3300002026_MIS_1000077350 CDS_TPM_bin 40443.020
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 day 969 3300002024_MIS_11796321 CDS_TPM_bin 509.511
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 night 969 3300002024_MIS_11796321 CDS_TPM_bin 168.705
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 night 969 3300002024_MIS_11796321 CDS_TPM_bin 593.405
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 day 969 3300002024_MIS_11796321 CDS_TPM_bin 684.977
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 day 969 3300002024_MIS_11796321 CDS_TPM_bin 936.966
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 night 969 3300002024_MIS_11796321 CDS_TPM_bin 1031.116
scaffold_102__MIS_10000103.27 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_100001039 CDS_TPM_sample 0.237
scaffold_102__MIS_10000103.27 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_100001039 CDS_TPM_sample 0.157
scaffold_102__MIS_10000103.27 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_100001039 CDS_TPM_sample 0.000
scaffold_147734__MIS_10107406.1 Unassigned psaA night 1713 3300002027_MIS_101074061 CDS_TPM_sample 0.000
scaffold_147734__MIS_10107406.1 Unassigned psaA day 1713 3300002027_MIS_101074061 CDS_TPM_sample 0.000
scaffold_149953__MIS_10109621.1 Unassigned psaA night 1491 3300002027_MIS_101096211 CDS_TPM_sample 0.360
scaffold_149953__MIS_10109621.1 Unassigned psaA day 1491 3300002027_MIS_101096211 CDS_TPM_sample 0.000
scaffold_19870__MIS_10019871.23 Planktothrix psaA night 423 3300002026_MIS_100198717 CDS_TPM_sample 19.262
scaffold_19870__MIS_10019871.23 Planktothrix psaA day 423 3300002026_MIS_100198717 CDS_TPM_sample 19.947
scaffold_19870__MIS_10019871.23 Planktothrix psaA night 423 3300002026_MIS_100198717 CDS_TPM_sample 4.059
scaffold_19870__MIS_10019871.23 Planktothrix psaA day 423 3300002026_MIS_100198717 CDS_TPM_sample 19.825
scaffold_19870__MIS_10019871.23 Planktothrix psaA night 423 3300002026_MIS_100198717 CDS_TPM_sample 27.901
scaffold_234100__MIS_1007579.1 Unassigned psaA day 1461 3300002024_MIS_10075791 CDS_TPM_sample 0.216
scaffold_234100__MIS_1007579.1 Unassigned psaA night 1461 3300002024_MIS_10075791 CDS_TPM_sample 1.940
scaffold_234100__MIS_1007579.1 Unassigned psaA day 1461 3300002024_MIS_10075791 CDS_TPM_sample 1.545
scaffold_234100__MIS_1007579.1 Unassigned psaA night 1461 3300002024_MIS_10075791 CDS_TPM_sample 2.020
scaffold_234100__MIS_1007579.1 Unassigned psaA night 1461 3300002024_MIS_10075791 CDS_TPM_sample 0.131
scaffold_240855__MIS_1013700.1 Unassigned psaA day 558 3300002024_MIS_10137001 CDS_TPM_sample 0.000
scaffold_240855__MIS_1013700.1 Unassigned psaA night 558 3300002024_MIS_10137001 CDS_TPM_sample 0.000
scaffold_251767__MIS_10187780.1 Unassigned psaA day 459 3300002027_MIS_101877801 CDS_TPM_sample 5.014
scaffold_251767__MIS_10187780.1 Unassigned psaA night 459 3300002027_MIS_101877801 CDS_TPM_sample 1.544
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_1000265839 CDS_TPM_sample 4.075
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_1000265839 CDS_TPM_sample 2.111
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_1000265839 CDS_TPM_sample 19.354
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA night 2259 3300002026_MIS_1000265839 CDS_TPM_sample 9.566
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_1000265839 CDS_TPM_sample 1.818
scaffold_2657__MIS_10002658.98 Bacillariophyte 2 (Bin_3_3) psaA day 2259 3300002026_MIS_1000265839 CDS_TPM_sample 18.561
scaffold_334045__MIS_10193787_merged Phormidium psaA night 2184 3300002027_MIS_101937872 CDS_TPM_sample 1040.865
scaffold_334045__MIS_10193787_merged Phormidium psaA night 2184 3300002027_MIS_101937872 CDS_TPM_sample 22.451
scaffold_334045__MIS_10193787_merged Phormidium psaA day 2184 3300002027_MIS_101937872 CDS_TPM_sample 81.430
scaffold_334045__MIS_10193787_merged Phormidium psaA day 2184 3300002027_MIS_101937872 CDS_TPM_sample 417.602
scaffold_334045__MIS_10193787_merged Phormidium psaA day 2184 3300002027_MIS_101937872 CDS_TPM_sample 436.691
scaffold_334045__MIS_10193787_merged Phormidium psaA night 2184 3300002027_MIS_101937872 CDS_TPM_sample 2197.553
scaffold_334215__MIS_1100032.1 Phormidium psaA night 1143 3300002024_MIS_11000321 CDS_TPM_sample 103.256
scaffold_334215__MIS_1100032.1 Phormidium psaA day 1143 3300002024_MIS_11000321 CDS_TPM_sample 39.796
scaffold_334215__MIS_1100032.1 Phormidium psaA day 1143 3300002024_MIS_11000321 CDS_TPM_sample 36.684
scaffold_334215__MIS_1100032.1 Phormidium psaA night 1143 3300002024_MIS_11000321 CDS_TPM_sample 343.408
scaffold_334215__MIS_1100032.1 Phormidium psaA night 1143 3300002024_MIS_11000321 CDS_TPM_sample 0.167
scaffold_334215__MIS_1100032.1 Phormidium psaA day 1143 3300002024_MIS_11000321 CDS_TPM_sample 96.638
scaffold_34243__MIS_10034244.13 Phormidium psaA night 1629 3300002026_MIS_100342444 CDS_TPM_sample 40.232
scaffold_34243__MIS_10034244.13 Phormidium psaA night 1629 3300002026_MIS_100342444 CDS_TPM_sample 9.955
scaffold_34243__MIS_10034244.13 Phormidium psaA day 1629 3300002026_MIS_100342444 CDS_TPM_sample 72.045
scaffold_34243__MIS_10034244.13 Phormidium psaA day 1629 3300002026_MIS_100342444 CDS_TPM_sample 29.303
scaffold_34243__MIS_10034244.13 Phormidium psaA night 1629 3300002026_MIS_100342444 CDS_TPM_sample 97.149
scaffold_34243__MIS_10034244.13 Phormidium psaA day 1629 3300002026_MIS_100342444 CDS_TPM_sample 5.623
scaffold_343756__MIS_1109041.1 Unassigned psaA night 1119 3300002024_MIS_11090411 CDS_TPM_sample 0.479
scaffold_343756__MIS_1109041.1 Unassigned psaA night 1119 3300002024_MIS_11090411 CDS_TPM_sample 2.216
scaffold_343756__MIS_1109041.1 Unassigned psaA day 1119 3300002024_MIS_11090411 CDS_TPM_sample 0.000
scaffold_343846__MIS_1109128.1 Unassigned psaA night 1119 3300002024_MIS_11091281 CDS_TPM_sample 0.719
scaffold_343846__MIS_1109128.1 Unassigned psaA day 1119 3300002024_MIS_11091281 CDS_TPM_sample 0.144
scaffold_343846__MIS_1109128.1 Unassigned psaA night 1119 3300002024_MIS_11091281 CDS_TPM_sample 0.633
scaffold_47288__MIS_10010142.13 Unassigned psaA day 711 3300002027_MIS_100101424 CDS_TPM_sample 0.000
scaffold_47288__MIS_10010142.13 Unassigned psaA night 711 3300002027_MIS_100101424 CDS_TPM_sample 0.000
scaffold_5889__MIS_10005890.143 Pseudanabaena psaA night 2253 3300002026_MIS_1000589039 CDS_TPM_sample 0.157
scaffold_5889__MIS_10005890.143 Pseudanabaena psaA night 2253 3300002026_MIS_1000589039 CDS_TPM_sample 0.119
scaffold_5889__MIS_10005890.143 Pseudanabaena psaA day 2253 3300002026_MIS_1000589039 CDS_TPM_sample 0.286
scaffold_92128__MIS_10052180.1 Unassigned psaA night 1737 3300002027_MIS_100521801 CDS_TPM_sample 1.544
scaffold_92128__MIS_10052180.1 Unassigned psaA night 1737 3300002027_MIS_100521801 CDS_TPM_sample 1.632
scaffold_92128__MIS_10052180.1 Unassigned psaA day 1737 3300002027_MIS_100521801 CDS_TPM_sample 0.836
scaffold_92128__MIS_10052180.1 Unassigned psaA day 1737 3300002027_MIS_100521801 CDS_TPM_sample 0.442
scaffold_9511__MIS_10009512_merged Bacillariophyte 1 (Bin_3_1) psaA night 642 3300002026_MIS_1000951211 CDS_TPM_sample 0.000
scaffold_9511__MIS_10009512_merged Bacillariophyte 1 (Bin_3_1) psaA day 642 3300002026_MIS_1000951211 CDS_TPM_sample 0.000
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 day 1095 3300002026_MIS_1001011011 CDS_TPM_sample 19.440
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 night 1095 3300002026_MIS_1001011011 CDS_TPM_sample 4.182
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 night 1095 3300002026_MIS_1001011011 CDS_TPM_sample 34.539
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 day 1095 3300002026_MIS_1001011011 CDS_TPM_sample 8.654
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 night 1095 3300002026_MIS_1001011011 CDS_TPM_sample 61.793
scaffold_10109__MIS_10010110.33 Phormidium psbA_2 day 1095 3300002026_MIS_1001011011 CDS_TPM_sample 51.838
scaffold_3907__MIS_10003908.31 Pseudanabaena psbA_2 day 1074 3300002026_MIS_100039089 CDS_TPM_sample 0.000
scaffold_3907__MIS_10003908.31 Pseudanabaena psbA_2 night 1074 3300002026_MIS_100039089 CDS_TPM_sample 0.000
scaffold_103526__MIS_10063424.9 Unassigned psbA_3 night 1083 3300002027_MIS_100634243 CDS_TPM_sample 0.352
scaffold_103526__MIS_10063424.9 Unassigned psbA_3 day 1083 3300002027_MIS_100634243 CDS_TPM_sample 0.000
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 night 1083 3300002026_MIS_100299244 CDS_TPM_sample 93.369
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 day 1083 3300002026_MIS_100299244 CDS_TPM_sample 226.649
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 night 1083 3300002026_MIS_100299244 CDS_TPM_sample 1293.376
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 night 1083 3300002026_MIS_100299244 CDS_TPM_sample 768.282
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 day 1083 3300002026_MIS_100299244 CDS_TPM_sample 125.712
scaffold_29923__MIS_10029924.7 Phormidium psbA_3 day 1083 3300002026_MIS_100299244 CDS_TPM_sample 195.218
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 day 1083 3300002026_MIS_100073893 CDS_TPM_sample 12.749
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 night 1083 3300002026_MIS_100073893 CDS_TPM_sample 30.216
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 night 1083 3300002026_MIS_100073893 CDS_TPM_sample 9.865
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 night 1083 3300002026_MIS_100073893 CDS_TPM_sample 22.243
scaffold_7388__MIS_10007389.8 Planktothrix psbA_3 day 1083 3300002026_MIS_100073893 CDS_TPM_sample 6.552
scaffold_775__MIS_10000776.97 Pseudanabaena psbA_3 night 1083 3300002026_MIS_1000077629 CDS_TPM_sample 0.248
scaffold_775__MIS_10000776.97 Pseudanabaena psbA_3 night 1083 3300002026_MIS_1000077629 CDS_TPM_sample 1.308
scaffold_775__MIS_10000776.97 Pseudanabaena psbA_3 day 1083 3300002026_MIS_1000077629 CDS_TPM_sample 0.000
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 night 450 3300002026_MIS_100155921 CDS_TPM_sample 3.936
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 day 450 3300002026_MIS_100155921 CDS_TPM_sample 0.717
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 day 450 3300002026_MIS_100155921 CDS_TPM_sample 30.886
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 night 450 3300002026_MIS_100155921 CDS_TPM_sample 35.168
scaffold_15591__MIS_10015592.1 Bacillariophyte 2 (Bin_3_3) psbA_4 night 450 3300002026_MIS_100155921 CDS_TPM_sample 0.848
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 night 843 3300002027_MIS_101322185 CDS_TPM_sample 42.637
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 night 843 3300002027_MIS_101322185 CDS_TPM_sample 18.070
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 day 843 3300002027_MIS_101322185 CDS_TPM_sample 2.623
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 night 843 3300002027_MIS_101322185 CDS_TPM_sample 7.242
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 day 843 3300002027_MIS_101322185 CDS_TPM_sample 13.965
scaffold_172578__MIS_10132218_merged Planktothrix psbA_4 day 843 3300002027_MIS_101322185 CDS_TPM_sample 115.560
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 night 1083 3300002026_MIS_100266613 CDS_TPM_sample 46.810
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 day 1083 3300002026_MIS_100266613 CDS_TPM_sample 3.500
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 day 1083 3300002026_MIS_100266613 CDS_TPM_sample 5.666
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 day 1083 3300002026_MIS_100266613 CDS_TPM_sample 5.212
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 night 1083 3300002026_MIS_100266613 CDS_TPM_sample 3.876
scaffold_26660__MIS_10026661.5 Bacillariophyte 1 (Bin_3_1) psbA_4 night 1083 3300002026_MIS_100266613 CDS_TPM_sample 36.309
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 day 726 3300002026_MIS_100267815 CDS_TPM_sample 20.450
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 day 726 3300002026_MIS_100267815 CDS_TPM_sample 23.102
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 night 726 3300002026_MIS_100267815 CDS_TPM_sample 115.642
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 night 726 3300002026_MIS_100267815 CDS_TPM_sample 54.163
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 night 726 3300002026_MIS_100267815 CDS_TPM_sample 5.519
scaffold_26780__MIS_10026781.16 Bacillariophyte 1 (Bin_3_1) psbA_4 day 726 3300002026_MIS_100267815 CDS_TPM_sample 26.414
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 night 963 3300002026_MIS_100299206 CDS_TPM_sample 141.629
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 day 963 3300002026_MIS_100299206 CDS_TPM_sample 12.137
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 night 963 3300002026_MIS_100299206 CDS_TPM_sample 3.764
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 day 963 3300002026_MIS_100299206 CDS_TPM_sample 13.732
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 day 963 3300002026_MIS_100299206 CDS_TPM_sample 39.827
scaffold_29919__MIS_10029920.21 Spirulina psbA_4 night 963 3300002026_MIS_100299206 CDS_TPM_sample 30.639
scaffold_360104__MIS_1124561.1 Unassigned psbA_4 day 1083 3300002024_MIS_11245611 CDS_TPM_sample 5.510
scaffold_360104__MIS_1124561.1 Unassigned psbA_4 day 1083 3300002024_MIS_11245611 CDS_TPM_sample 2.917
scaffold_360104__MIS_1124561.1 Unassigned psbA_4 night 1083 3300002024_MIS_11245611 CDS_TPM_sample 45.141
scaffold_360104__MIS_1124561.1 Unassigned psbA_4 night 1083 3300002024_MIS_11245611 CDS_TPM_sample 7.430
scaffold_360104__MIS_1124561.1 Unassigned psbA_4 night 1083 3300002024_MIS_11245611 CDS_TPM_sample 0.529
scaffold_360104__MIS_1124561.1 Unassigned psbA_4 day 1083 3300002024_MIS_11245611 CDS_TPM_sample 12.749
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 night 843 3300002026_MIS_1000067552 CDS_TPM_sample 645.916
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 night 843 3300002026_MIS_1000067552 CDS_TPM_sample 326.941
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 day 843 3300002026_MIS_1000067552 CDS_TPM_sample 1276.274
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 night 843 3300002026_MIS_1000067552 CDS_TPM_sample 178.116
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 day 843 3300002026_MIS_1000067552 CDS_TPM_sample 198.188
scaffold_674__MIS_10000675_merged Bacillariophyte 2 (Bin_3_3) psbA_4 day 843 3300002026_MIS_1000067552 CDS_TPM_sample 152.867
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 night 345 3300002026_MIS_1000077350 CDS_TPM_sample 2010.559
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 day 345 3300002026_MIS_1000077350 CDS_TPM_sample 680.593
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 night 345 3300002026_MIS_1000077350 CDS_TPM_sample 1168.530
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 night 345 3300002026_MIS_1000077350 CDS_TPM_sample 340.104
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 day 345 3300002026_MIS_1000077350 CDS_TPM_sample 344.624
scaffold_772__MIS_10000773.170 Bacillariophyte 2 (Bin_3_3) psbA_4 day 345 3300002026_MIS_1000077350 CDS_TPM_sample 721.496
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 day 969 3300002024_MIS_11796321 CDS_TPM_sample 16.643
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 night 969 3300002024_MIS_11796321 CDS_TPM_sample 4.725
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 night 969 3300002024_MIS_11796321 CDS_TPM_sample 52.040
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 day 969 3300002024_MIS_11796321 CDS_TPM_sample 56.204
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 day 969 3300002024_MIS_11796321 CDS_TPM_sample 26.731
scaffold_997195__MIS_1179632_merged Phormidium psbA_4 night 969 3300002024_MIS_11796321 CDS_TPM_sample 144.408

What do these data mean? This table has some of the same columns as above, here are some new ones.

  • Gene: this is the messy label for each gene in the metagenome. The label was automatically generated by the assembler and gene annotation software. These are the labels, alongside the GFF file for gene-calling, that the python script “HTSeq.scripts.count” uses to stringently recruit transcripts to genes. So I kept these messy labels, but sometimes had to refine the genes and thus the labels (see below).
  • label: in this table, this column is the short-name for each gene. For example, psaA is a key photosynthetic gene for Photosystem I.
  • time: this is analogous to the activity column from Figure 1, but this time we are keen to parse day from night.
  • cds_length: Remember I mentioned the GFF file for gene-calling? This column presents the length of the CDS annotated as this gene. I retained this feature in my analyses because 1). TPM uses gene length; 2). sometimes the assembler was not so great for assembling genes, and 3). sometimes the gene-calling software prematurely called an end to a gene because it observed a stop codon. But in my scrutiny of these contigs, sometimes I could reconcile two pieces of a gene that had been split but were on the same contig. For example, *scaffold_997195__MIS_1179632_merged* is actually the sum of two CDS on the same contig only nucleotides apart, that were attributed to psbA but were independently too short to be a complete psbA gene. Since the parameters of the “HTSeq.scripts.count” were stringent, if I recovered the split genes, I could sum their recruited transcripts to represent the total recruitment for this gene.
  • accession: This column lists the names of the genes, which you could use to evaluate on IMG. The nomenclature is: (IMG Genome ID)_(gene name) where the IMGdataset is one of three options. The gene name you want to use on IMG will start with “MIS”. For example, if you want to find the psaA gene 3300002026_MIS_100001039, you would look at IMG Genome ID “3300002026” and search for gene “MIS_100001039” in that dataset.
  • metric: this column lists which normalization method I used. CDS_TPM_sample means that I normalized using the TPM (Transcripts Per Million) metric, and the denominator is the sum of all transcripts recruited to that sample. CDS_TPM_bin means the denominator is the sum of all transcripts recruited to that bin in that sample. Note that if the gene was on a contig that could not be binned, then CDS_TPM_bin is NA (not available).
  • TPM: this is the normalized transcriptional activity level for each gene, with respect to the metric used.

Figure 2 and Supplemental Figure 4 source from this same table, but Supplemental Figure 4 presents the sample-normalized metric (CDS_TPM_sample) whereas Figure 2 uses the bin- and sample-normalized metric (CDS_TPM_bin).

Figure 2: Relative abundance of transcripts for photosystem genes normalized by total number of sequences in each sample.

Figure 3.

This figure presents the relative expression of different versions of psbA genes in our oxyphototrophs. Let’s take a look at the data sourcing this figure.

Differences in activity levels of different versions of psbA
Organism label time metric ratio_of_transcripts
7 Phormidium psbA_2 day psbA_psaA 0.020
9 Phormidium psbA_2 day psbA_psaA 0.050
12 Phormidium psbA_2 day psbA_psaA 0.041
13 Phormidium psbA_2 night psbA_psaA 0.070
16 Phormidium psbA_2 night psbA_psaA 0.015
18 Phormidium psbA_2 night psbA_psaA 0.013
24 Pseudanabaena psbA_2 day psbA_psaA 0.000
26 Pseudanabaena psbA_2 night psbA_psaA 0.000
28 Pseudanabaena psbA_2 night psbA_psaA 0.000
1 Bacillariophyte 2 (Bin_3_3) psbA_3+4 day psbA_psaA 9.592
2 Bacillariophyte 2 (Bin_3_3) psbA_3+4 day psbA_psaA 26.917
3 Bacillariophyte 2 (Bin_3_3) psbA_3+4 day psbA_psaA 326.000
4 Bacillariophyte 2 (Bin_3_3) psbA_3+4 night psbA_psaA 56.160
5 Bacillariophyte 2 (Bin_3_3) psbA_3+4 night psbA_psaA 28.333
6 Bacillariophyte 2 (Bin_3_3) psbA_3+4 night psbA_psaA 30.984
8 Phormidium psbA_3+4 day psbA_psaA 0.218
10 Phormidium psbA_3+4 day psbA_psaA 0.263
11 Phormidium psbA_3+4 day psbA_psaA 0.697
14 Phormidium psbA_3+4 night psbA_psaA 1.615
15 Phormidium psbA_3+4 night psbA_psaA 0.346
17 Phormidium psbA_3+4 night psbA_psaA 0.293
19 Planktothrix psbA_3+4 day psbA_psaA 2.250
20 Planktothrix psbA_3+4 day psbA_psaA 13.182
21 Planktothrix psbA_3+4 night psbA_psaA 9.778
22 Planktothrix psbA_3+4 night psbA_psaA 5.818
23 Planktothrix psbA_3+4 night psbA_psaA 4.826
25 Pseudanabaena psbA_3+4 day psbA_psaA 0.000
27 Pseudanabaena psbA_3+4 night psbA_psaA 1.000
29 Pseudanabaena psbA_3+4 night psbA_psaA 4.000
30 Unassigned psbA_3+4 day psbA_psaA 1.542
31 Unassigned psbA_3+4 day psbA_psaA 4.500
32 Unassigned psbA_3+4 day psbA_psaA 10.000
33 Unassigned psbA_3+4 night psbA_psaA 5.000
34 Unassigned psbA_3+4 night psbA_psaA 1.071
35 Unassigned psbA_3+4 night psbA_psaA 5.111
  • label: this builds upon the gene name, by evaluating phylogeny to these psbA genes and attributing putative ideal conditions for functioning.
  • metric: in this figure and table, I am evaluating the ratio of transcripts attributed to psbA, to transcripts attributed to psaA. This effort normalizes expression of different psbA versions, by the expression of psaA. Because psaA is transcribed for a protein used in Photosystem I, which is used in both oxygenic photosynthesis (with Photosystem II) and anoxygenic photosynthesis (using SQR), then this is a “baseline” for photosynthesis. In physiological studies, some cyanobacteria have different versions of psbA keyed to different physico- or geochemical conditions. The MIS cyanobacteria have at least the dominant psbA version which is psbA4, some have variant psbA3 used in low-oxygen conditions, and two members have an anaerobic version psbA2. Please see Grim and Dick, 2016 for more information on how we evaluated phylogeny and putative conditions.
  • ratio_of_transcripts: here is that ratio.

Figure 3: Ratio of transcript abundances for photosystem II (psbA) to photosystem I (psaA) genes in day and night, shown for each MAG (top) with box-and-whisker plots.

Figure 4.

This figure presents the relative abundance of different versions of sqr genes in the Phormidium MAG. Let’s take a look at the data sourcing this figure.

Differences in activity levels of different versions of sqr
Gene Organism label time cds_length metric TPM accession
scaffold_3907__MIS_10003908.16 Pseudanabaena sqrI night 1302 CDS_TPM_bin 0.00 3300002026_MIS_100039085
scaffold_3907__MIS_10003908.16 Pseudanabaena sqrI night 1302 CDS_TPM_bin 0.00 3300002026_MIS_100039085
scaffold_3907__MIS_10003908.16 Pseudanabaena sqrI day 1302 CDS_TPM_bin 0.00 3300002026_MIS_100039085
scaffold_3907__MIS_10003908.16 Pseudanabaena sqrI day 1302 CDS_TPM_bin 0.00 3300002026_MIS_100039085
scaffold_3907__MIS_10003908.16 Pseudanabaena sqrI day 1302 CDS_TPM_bin 0.00 3300002026_MIS_100039085
scaffold_3907__MIS_10003908.16 Pseudanabaena sqrI night 1302 CDS_TPM_bin 0.00 3300002026_MIS_100039085
scaffold_54969__MIS_10016899.18 Phormidium sqrI day 1323 CDS_TPM_bin 8.37 3300002027_MIS_100168996
scaffold_54969__MIS_10016899.18 Phormidium sqrI night 1323 CDS_TPM_bin 25.43 3300002027_MIS_100168996
scaffold_54969__MIS_10016899.18 Phormidium sqrI day 1323 CDS_TPM_bin 28.27 3300002027_MIS_100168996
scaffold_54969__MIS_10016899.18 Phormidium sqrI night 1323 CDS_TPM_bin 36.33 3300002027_MIS_100168996
scaffold_54969__MIS_10016899.18 Phormidium sqrI day 1323 CDS_TPM_bin 55.98 3300002027_MIS_100168996
scaffold_54969__MIS_10016899.18 Phormidium sqrI night 1323 CDS_TPM_bin 10.30 3300002027_MIS_100168996
scaffold_10109__MIS_10010110.20 Phormidium sqrII day 1314 CDS_TPM_bin 63.88 3300002026_MIS_100101107
scaffold_10109__MIS_10010110.20 Phormidium sqrII night 1314 CDS_TPM_bin 31.10 3300002026_MIS_100101107
scaffold_10109__MIS_10010110.20 Phormidium sqrII night 1314 CDS_TPM_bin 86.12 3300002026_MIS_100101107
scaffold_10109__MIS_10010110.20 Phormidium sqrII day 1314 CDS_TPM_bin 85.37 3300002026_MIS_100101107
scaffold_10109__MIS_10010110.20 Phormidium sqrII day 1314 CDS_TPM_bin 58.98 3300002026_MIS_100101107
scaffold_10109__MIS_10010110.20 Phormidium sqrII night 1314 CDS_TPM_bin 198.28 3300002026_MIS_100101107
scaffold_33821__MIS_10033822.23 Planktothrix sqrII day 1314 CDS_TPM_bin 0.00 3300002026_MIS_100338228
scaffold_33821__MIS_10033822.23 Planktothrix sqrII night 1314 CDS_TPM_bin 0.00 3300002026_MIS_100338228
scaffold_33821__MIS_10033822.23 Planktothrix sqrII night 1314 CDS_TPM_bin 0.00 3300002026_MIS_100338228
scaffold_33821__MIS_10033822.23 Planktothrix sqrII night 1314 CDS_TPM_bin 0.00 3300002026_MIS_100338228
scaffold_33821__MIS_10033822.23 Planktothrix sqrII day 1314 CDS_TPM_bin 0.00 3300002026_MIS_100338228
scaffold_33821__MIS_10033822.23 Planktothrix sqrII day 1314 CDS_TPM_bin 0.00 3300002026_MIS_100338228
scaffold_775__MIS_10000776.112 Pseudanabaena sqrVI night 987 CDS_TPM_bin 0.00 3300002026_MIS_1000077633
scaffold_775__MIS_10000776.112 Pseudanabaena sqrVI day 987 CDS_TPM_bin 0.00 3300002026_MIS_1000077633
scaffold_775__MIS_10000776.112 Pseudanabaena sqrVI day 987 CDS_TPM_bin 0.00 3300002026_MIS_1000077633
scaffold_775__MIS_10000776.112 Pseudanabaena sqrVI night 987 CDS_TPM_bin 0.00 3300002026_MIS_1000077633
scaffold_775__MIS_10000776.112 Pseudanabaena sqrVI night 987 CDS_TPM_bin 0.00 3300002026_MIS_1000077633
scaffold_775__MIS_10000776.112 Pseudanabaena sqrVI day 987 CDS_TPM_bin 0.00 3300002026_MIS_1000077633

Some of these are familiar. I want to point out this column:

  • metric: in this case, we are using the bin- and sample-normalized TPM, because we are focused only on Phormidium.

Figure 4, Relative abundance of transcripts for sulfide quinone reductase (SQR) type I (putatively involved in anoxygenic photosynthesis) and type II (putatively involved in sulfide detoxification) genes from the Phormidium MAG, normalized by transcripts recruited to the MAG for each sample.

Figure 5.

This figure presents the relative expression of dsrA and rdsrA genes in our MAGs. Let’s take a look at the data sourcing this figure.

Expression of dissimilatory sulfite reduction and reverse dissimilatory sulfite reduction
scaffold_anvio Gene name WellBinned MAG source Protein CDS_TPM_sample Type Organism
scaffold_259 dsrA well_binned bin_26 night 3300002026_MIS_1000026017 0.267 Reductive (dsrA) Desulfobacula (bin_26)
scaffold_259 dsrA well_binned bin_26 day 3300002026_MIS_1000026017 0.713 Reductive (dsrA) Desulfobacula (bin_26)
scaffold_712 dsrA well_binned bin_102 day 3300002026_MIS_1000071328 0.740 Reductive (dsrA) Desulfocapsa (bin_102)
scaffold_712 dsrA well_binned bin_102 day 3300002026_MIS_1000071328 0.599 Reductive (dsrA) Desulfocapsa (bin_102)
scaffold_712 dsrA well_binned bin_102 night 3300002026_MIS_1000071328 0.277 Reductive (dsrA) Desulfocapsa (bin_102)
scaffold_712 dsrA well_binned bin_102 night 3300002026_MIS_1000071328 0.838 Reductive (dsrA) Desulfocapsa (bin_102)
scaffold_13184 dsrA not_well_binned bin_204 day 3300002026_MIS_100131856 8.173 Reductive (dsrA) Desulfococcus (bin_204)
scaffold_13184 dsrA not_well_binned bin_204 night 3300002026_MIS_100131856 3.235 Reductive (dsrA) Desulfococcus (bin_204)
scaffold_13184 dsrA not_well_binned bin_204 day 3300002026_MIS_100131856 0.368 Reductive (dsrA) Desulfococcus (bin_204)
scaffold_13184 dsrA not_well_binned bin_204 night 3300002026_MIS_100131856 2.178 Reductive (dsrA) Desulfococcus (bin_204)
scaffold_13184 dsrA not_well_binned bin_204 day 3300002026_MIS_100131856 1.683 Reductive (dsrA) Desulfococcus (bin_204)
scaffold_19845 dsrA well_binned bin_101 day 3300002026_MIS_1001984613 0.240 Reductive (dsrA) Desulfococcus (bin_101)
scaffold_19845 dsrA well_binned bin_101 day 3300002026_MIS_1001984613 0.582 Reductive (dsrA) Desulfococcus (bin_101)
scaffold_19845 dsrA well_binned bin_101 night 3300002026_MIS_1001984613 0.000 Reductive (dsrA) Desulfococcus (bin_101)
scaffold_40931 dsrA not_well_binned NA day 3300002027_MIS_100047982 0.479 Reductive (dsrA) Desulfobacterales*
scaffold_40931 dsrA not_well_binned NA night 3300002027_MIS_100047982 0.000 Reductive (dsrA) Desulfobacterales*
scaffold_89345 dsrA not_well_binned NA night 3300002027_MIS_100494491 0.417 Reductive (dsrA) Desulfomicrobium*
scaffold_89345 dsrA not_well_binned NA night 3300002027_MIS_100494491 0.148 Reductive (dsrA) Desulfomicrobium*
scaffold_89345 dsrA not_well_binned NA day 3300002027_MIS_100494491 1.788 Reductive (dsrA) Desulfomicrobium*
scaffold_89345 dsrA not_well_binned NA night 3300002027_MIS_100494491 0.275 Reductive (dsrA) Desulfomicrobium*
scaffold_105912 dsrA not_well_binned NA night 3300002027_MIS_10065790_merged 0.151 Reductive (dsrA) Desulfobulbaceae*
scaffold_105912 dsrA not_well_binned NA night 3300002027_MIS_10065790_merged 0.280 Reductive (dsrA) Desulfobulbaceae*
scaffold_105912 dsrA not_well_binned NA day 3300002027_MIS_10065790_merged 0.000 Reductive (dsrA) Desulfobulbaceae*
scaffold_342 rdsrA well_binned bin_151 night 3300002026_MIS_1000034311 1.091 Oxidative (rdsrA) Betaproteobacteria (bin_151)
scaffold_342 rdsrA well_binned bin_151 day 3300002026_MIS_1000034311 0.486 Oxidative (rdsrA) Betaproteobacteria (bin_151)
scaffold_57215 rdsrA not_well_binned NA day 3300002026_MIS_100382858 0.251 Oxidative (rdsrA) Proteobacteria*
scaffold_57215 rdsrA not_well_binned NA night 3300002026_MIS_100382858 0.000 Oxidative (rdsrA) Proteobacteria*
scaffold_59288 rdsrA not_well_binned NA night 3300002027_MIS_100208275 1.093 Oxidative (rdsrA) Betaproteobacteria*
scaffold_59288 rdsrA not_well_binned NA day 3300002027_MIS_100208275 0.124 Oxidative (rdsrA) Betaproteobacteria*
scaffold_87455 rdsrA not_well_binned NA night 3300002027_MIS_100475991 0.657 Oxidative (rdsrA) Thiobacillus*
scaffold_87455 rdsrA not_well_binned NA day 3300002027_MIS_100475991 0.000 Oxidative (rdsrA) Thiobacillus*
scaffold_758 rdsrA well_binned bin_127 night 3300002026_MIS_10000759_merged 0.809 Oxidative (rdsrA) Hydrogenophilales (bin_127)
scaffold_758 rdsrA well_binned bin_127 night 3300002026_MIS_10000759_merged 0.204 Oxidative (rdsrA) Hydrogenophilales (bin_127)
scaffold_758 rdsrA well_binned bin_127 night 3300002026_MIS_10000759_merged 0.145 Oxidative (rdsrA) Hydrogenophilales (bin_127)
scaffold_758 rdsrA well_binned bin_127 day 3300002026_MIS_10000759_merged 0.000 Oxidative (rdsrA) Hydrogenophilales (bin_127)
scaffold_263346 rdsrA not_well_binned NA night 3300002027_MIS_10188750_merged 2.370 Oxidative (rdsrA) Thiothrix*
scaffold_263346 rdsrA not_well_binned NA day 3300002027_MIS_10188750_merged 0.000 Oxidative (rdsrA) Thiothrix*
scaffold_377213 rdsrA not_well_binned NA night 3300002027_MIS_10195876_merged 0.000 Oxidative (rdsrA) Beggiatoa*
scaffold_377213 rdsrA not_well_binned NA day 3300002027_MIS_10195876_merged 0.000 Oxidative (rdsrA) Beggiatoa*
  • scaffold_anvio: This is the assembler-generated name for each contig, which I used in my anvi’o analyses. This is
  • WellBinned: I assessed the quality of each MAG bin through metrics of completion and redundancy. Generally, if the MAG had >80% completion and <10% redundancy, it was considered “well_binned”.
  • source: similar to time, has only day or night. My factor naming is very messy, as you can tell.
  • Protein: this is the same column as accession above, but again, I’m messy and didn’t keep track of my factor names. (Spoiler: I also use this metagenome and R project for metaproteomics analysis, so in that case “Protein” makes sense.)
  • Type: After extracting all genes annotated as dsrA or rdsrA, I used the presence of dsrD to identify the gene as part of the reductive process, and dsrEFH to indicate oxidative.

Figure 5, Relative abundance of transcripts for key genes for dissimilatory sulfite reduction (dsrA) and reverse dissimilatory sulfite reduction (rdsrA) normalized by total number of sequences in each sample.

Figure 6.

This figure presents the relative expression of genes from different autotrophic metabolisms in our MAGs. Let’s take a look at the data sourcing this figure. This table is comparatively large; it has 698 rows and 21 columns.

Expression of autotrophy in MIS MAGs
MAG KOCategory scaffold_anvio IMGScaffold gene_id Protein Description Category Short name System source CDS_TPM_sample CDS_TPM_bin time Organism Pathway Label
199 Bin_1 K01601 scaffold_97311 3300002027_MIS_10057292 MIS_100572921 3300002027_MIS_100572921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 17.439 611.3 day Phormidium Autotrophy RuBisCo Phormidium (Bin_1)
200 Bin_1 K01601 scaffold_97311 3300002027_MIS_10057292 MIS_100572921 3300002027_MIS_100572921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 231.304 2637.5 night Phormidium Autotrophy RuBisCo Phormidium (Bin_1)
201 Bin_1 K01601 scaffold_97311 3300002027_MIS_10057292 MIS_100572921 3300002027_MIS_100572921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 4.266 152.3 night Phormidium Autotrophy RuBisCo Phormidium (Bin_1)
202 Bin_1 K01601 scaffold_97311 3300002027_MIS_10057292 MIS_100572921 3300002027_MIS_100572921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 58.263 1783.7 day Phormidium Autotrophy RuBisCo Phormidium (Bin_1)
203 Bin_1 K01601 scaffold_97311 3300002027_MIS_10057292 MIS_100572921 3300002027_MIS_100572921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 80.405 979.9 day Phormidium Autotrophy RuBisCo Phormidium (Bin_1)
204 Bin_1 K01601 scaffold_97311 3300002027_MIS_10057292 MIS_100572921 3300002027_MIS_100572921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 452.289 3229.5 night Phormidium Autotrophy RuBisCo Phormidium (Bin_1)
205 bin_235_243 K01601 scaffold_46456 3300002027_MIS_10009437 MIS_100094373 3300002027_MIS_100094373 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 10.706 3469.4 day Planktothrix Autotrophy RuBisCo Planktothrix (bin_235_243)
206 bin_235_243 K01601 scaffold_46456 3300002027_MIS_10009437 MIS_100094373 3300002027_MIS_100094373 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 2.133 1903.3 night Planktothrix Autotrophy RuBisCo Planktothrix (bin_235_243)
207 bin_235_243 K01601 scaffold_46456 3300002027_MIS_10009437 MIS_100094373 3300002027_MIS_100094373 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 48.026 7853.0 night Planktothrix Autotrophy RuBisCo Planktothrix (bin_235_243)
208 bin_235_243 K01601 scaffold_46456 3300002027_MIS_10009437 MIS_100094373 3300002027_MIS_100094373 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 33.927 4565.6 night Planktothrix Autotrophy RuBisCo Planktothrix (bin_235_243)
209 bin_235_243 K01601 scaffold_46456 3300002027_MIS_10009437 MIS_100094373 3300002027_MIS_100094373 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 2.428 2062.5 day Planktothrix Autotrophy RuBisCo Planktothrix (bin_235_243)
210 bin_235_243 K01601 scaffold_46456 3300002027_MIS_10009437 MIS_100094373 3300002027_MIS_100094373 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 18.225 2313.4 day Planktothrix Autotrophy RuBisCo Planktothrix (bin_235_243)
211 bin_143 K01601 scaffold_1147 3300002026_MIS_10001148 MIS_1000114837 3300002026_MIS_1000114837 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Pseudanabaena Autotrophy RuBisCo Pseudanabaena (bin_143)
212 bin_143 K01601 scaffold_1147 3300002026_MIS_10001148 MIS_1000114837 3300002026_MIS_1000114837 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 5.490 19961.0 night Pseudanabaena Autotrophy RuBisCo Pseudanabaena (bin_143)
213 bin_143 K01601 scaffold_1147 3300002026_MIS_10001148 MIS_1000114837 3300002026_MIS_1000114837 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 1.179 1522.1 day Pseudanabaena Autotrophy RuBisCo Pseudanabaena (bin_143)
214 bin_143 K01601 scaffold_1147 3300002026_MIS_10001148 MIS_1000114837 3300002026_MIS_1000114837 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Pseudanabaena Autotrophy RuBisCo Pseudanabaena (bin_143)
215 bin_143 K01601 scaffold_1147 3300002026_MIS_10001148 MIS_1000114837 3300002026_MIS_1000114837 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Pseudanabaena Autotrophy RuBisCo Pseudanabaena (bin_143)
216 bin_143 K01601 scaffold_1147 3300002026_MIS_10001148 MIS_1000114837 3300002026_MIS_1000114837 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 5.697 1945.1 night Pseudanabaena Autotrophy RuBisCo Pseudanabaena (bin_143)
217 bin_256 K01601 scaffold_3553 3300002026_MIS_10003554 MIS_1000355412 3300002026_MIS_1000355412 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 3.510 15784.5 night Spirulina Autotrophy RuBisCo Spirulina (bin_256)
218 bin_256 K01601 scaffold_3553 3300002026_MIS_10003554 MIS_1000355412 3300002026_MIS_1000355412 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Spirulina Autotrophy RuBisCo Spirulina (bin_256)
219 bin_256 K01601 scaffold_3553 3300002026_MIS_10003554 MIS_1000355412 3300002026_MIS_1000355412 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Spirulina Autotrophy RuBisCo Spirulina (bin_256)
220 bin_256 K01601 scaffold_3553 3300002026_MIS_10003554 MIS_1000355412 3300002026_MIS_1000355412 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Spirulina Autotrophy RuBisCo Spirulina (bin_256)
221 bin_256 K01601 scaffold_3553 3300002026_MIS_10003554 MIS_1000355412 3300002026_MIS_1000355412 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 1.329 21429.2 night Spirulina Autotrophy RuBisCo Spirulina (bin_256)
222 bin_256 K01601 scaffold_3553 3300002026_MIS_10003554 MIS_1000355412 3300002026_MIS_1000355412 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.457 21313.1 day Spirulina Autotrophy RuBisCo Spirulina (bin_256)
1 Bin_3_1 K01601 scaffold_53144 3300002026_MIS_10037879 MIS_100378791 3300002026_MIS_100378791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Bacillariophyte 1 Autotrophy RuBisCo Bacillariophyte 1 (Bin_3_1)
2 Bin_3_1 K01601 scaffold_53144 3300002026_MIS_10037879 MIS_100378791 3300002026_MIS_100378791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Bacillariophyte 1 Autotrophy RuBisCo Bacillariophyte 1 (Bin_3_1)
3 Bin_3_1 K01601 scaffold_53144 3300002026_MIS_10037879 MIS_100378791 3300002026_MIS_100378791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.182 236.4 night Bacillariophyte 1 Autotrophy RuBisCo Bacillariophyte 1 (Bin_3_1)
4 Bin_3_1 K01601 scaffold_53144 3300002026_MIS_10037879 MIS_100378791 3300002026_MIS_100378791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Bacillariophyte 1 Autotrophy RuBisCo Bacillariophyte 1 (Bin_3_1)
5 Bin_3_1 K01601 scaffold_53144 3300002026_MIS_10037879 MIS_100378791 3300002026_MIS_100378791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Bacillariophyte 1 Autotrophy RuBisCo Bacillariophyte 1 (Bin_3_1)
6 Bin_3_1 K01601 scaffold_53144 3300002026_MIS_10037879 MIS_100378791 3300002026_MIS_100378791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Bacillariophyte 1 Autotrophy RuBisCo Bacillariophyte 1 (Bin_3_1)
7 Bin_3_3 K01601 scaffold_433 3300002026_MIS_10000434 MIS_1000043450 3300002026_MIS_1000043450 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 17.316 601.5 night Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
9 Bin_3_3 K01601 scaffold_433 3300002026_MIS_10000434 MIS_1000043450 3300002026_MIS_1000043450 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 3.886 415.1 night Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
11 Bin_3_3 K01601 scaffold_433 3300002026_MIS_10000434 MIS_1000043450 3300002026_MIS_1000043450 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 25.400 2552.3 day Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
12 Bin_3_3 K01601 scaffold_433 3300002026_MIS_10000434 MIS_1000043450 3300002026_MIS_1000043450 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 37.876 2676.5 night Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
16 Bin_3_3 K01601 scaffold_433 3300002026_MIS_10000434 MIS_1000043450 3300002026_MIS_1000043450 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 28.121 722.9 day Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
18 Bin_3_3 K01601 scaffold_433 3300002026_MIS_10000434 MIS_1000043450 3300002026_MIS_1000043450 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 13.725 769.3 day Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
8 Bin_3_3 K01601 scaffold_102 3300002026_MIS_10000103 MIS_1000010385 3300002026_MIS_1000010385 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
10 Bin_3_3 K01601 scaffold_102 3300002026_MIS_10000103 MIS_1000010385 3300002026_MIS_1000010385 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.962 33.4 night Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
13 Bin_3_3 K01601 scaffold_102 3300002026_MIS_10000103 MIS_1000010385 3300002026_MIS_1000010385 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.182 12.9 night Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
14 Bin_3_3 K01601 scaffold_102 3300002026_MIS_10000103 MIS_1000010385 3300002026_MIS_1000010385 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
15 Bin_3_3 K01601 scaffold_102 3300002026_MIS_10000103 MIS_1000010385 3300002026_MIS_1000010385 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
17 Bin_3_3 K01601 scaffold_102 3300002026_MIS_10000103 MIS_1000010385 3300002026_MIS_1000010385 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Bacillariophyte 2 Autotrophy RuBisCo Bacillariophyte 2 (Bin_3_3)
85 bin_91 K01601 scaffold_26178 3300002026_MIS_10026179 MIS_100261791 3300002026_MIS_100261791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_91)
86 bin_91 K01601 scaffold_26178 3300002026_MIS_10026179 MIS_100261791 3300002026_MIS_100261791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_91)
87 bin_91 K01601 scaffold_26178 3300002026_MIS_10026179 MIS_100261791 3300002026_MIS_100261791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_91)
88 bin_91 K01601 scaffold_26178 3300002026_MIS_10026179 MIS_100261791 3300002026_MIS_100261791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_91)
89 bin_91 K01601 scaffold_26178 3300002026_MIS_10026179 MIS_100261791 3300002026_MIS_100261791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_91)
90 bin_91 K01601 scaffold_26178 3300002026_MIS_10026179 MIS_100261791 3300002026_MIS_100261791 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_91)
115 bin_127 K01601 scaffold_5013 3300002026_MIS_10005014 MIS_1000501414 3300002026_MIS_1000501414 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_127)
116 bin_127 K01601 scaffold_5013 3300002026_MIS_10005014 MIS_1000501414 3300002026_MIS_1000501414 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_127)
117 bin_127 K01601 scaffold_5013 3300002026_MIS_10005014 MIS_1000501414 3300002026_MIS_1000501414 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_127)
118 bin_127 K01601 scaffold_5013 3300002026_MIS_10005014 MIS_1000501414 3300002026_MIS_1000501414 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_127)
119 bin_127 K01601 scaffold_5013 3300002026_MIS_10005014 MIS_1000501414 3300002026_MIS_1000501414 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_127)
120 bin_127 K01601 scaffold_5013 3300002026_MIS_10005014 MIS_1000501414 3300002026_MIS_1000501414 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_127)
121 bin_151 K01601 scaffold_26151 3300002026_MIS_10026152 MIS_100261524 3300002026_MIS_100261524 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
122 bin_151 K01601 scaffold_26151 3300002026_MIS_10026152 MIS_100261524 3300002026_MIS_100261524 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
127 bin_151 K01601 scaffold_26151 3300002026_MIS_10026152 MIS_100261524 3300002026_MIS_100261524 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
131 bin_151 K01601 scaffold_26151 3300002026_MIS_10026152 MIS_100261524 3300002026_MIS_100261524 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
135 bin_151 K01601 scaffold_26151 3300002026_MIS_10026152 MIS_100261524 3300002026_MIS_100261524 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
139 bin_151 K01601 scaffold_26151 3300002026_MIS_10026152 MIS_100261524 3300002026_MIS_100261524 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
123 bin_151 K01601 scaffold_5815 3300002026_MIS_10005816 MIS_100058161 3300002026_MIS_100058161 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
124 bin_151 K01601 scaffold_5815 3300002026_MIS_10005816 MIS_100058161 3300002026_MIS_100058161 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
126 bin_151 K01601 scaffold_5815 3300002026_MIS_10005816 MIS_100058161 3300002026_MIS_100058161 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.366 5950.1 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
132 bin_151 K01601 scaffold_5815 3300002026_MIS_10005816 MIS_100058161 3300002026_MIS_100058161 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
133 bin_151 K01601 scaffold_5815 3300002026_MIS_10005816 MIS_100058161 3300002026_MIS_100058161 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
134 bin_151 K01601 scaffold_5815 3300002026_MIS_10005816 MIS_100058161 3300002026_MIS_100058161 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.277 4332.9 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
125 bin_151 K01601 scaffold_11727 3300002026_MIS_10011728 MIS_1001172810 3300002026_MIS_1001172810 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
128 bin_151 K01601 scaffold_11727 3300002026_MIS_10011728 MIS_1001172810 3300002026_MIS_1001172810 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
129 bin_151 K01601 scaffold_11727 3300002026_MIS_10011728 MIS_1001172810 3300002026_MIS_1001172810 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
136 bin_151 K01601 scaffold_11727 3300002026_MIS_10011728 MIS_1001172810 3300002026_MIS_1001172810 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
137 bin_151 K01601 scaffold_11727 3300002026_MIS_10011728 MIS_1001172810 3300002026_MIS_1001172810 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.450 7050.5 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
140 bin_151 K01601 scaffold_11727 3300002026_MIS_10011728 MIS_1001172810 3300002026_MIS_1001172810 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
130 bin_151 K01601 scaffold_26191 3300002026_MIS_10026192 MIS_100261921 3300002026_MIS_100261921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
138 bin_151 K01601 scaffold_26191 3300002026_MIS_10026192 MIS_100261921 3300002026_MIS_100261921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
141 bin_151 K01601 scaffold_26191 3300002026_MIS_10026192 MIS_100261921 3300002026_MIS_100261921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
142 bin_151 K01601 scaffold_26191 3300002026_MIS_10026192 MIS_100261921 3300002026_MIS_100261921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
143 bin_151 K01601 scaffold_26191 3300002026_MIS_10026192 MIS_100261921 3300002026_MIS_100261921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
144 bin_151 K01601 scaffold_26191 3300002026_MIS_10026192 MIS_100261921 3300002026_MIS_100261921 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria Autotrophy RuBisCo Betaproteobacteria (bin_151)
109 bin_122 K01601 scaffold_4035 3300002026_MIS_10004036 MIS_1000403617 3300002026_MIS_1000403617 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria;Candidatus Accumulibacter Autotrophy RuBisCo Betaproteobacteria;Candidatus Accumulibacter (bin_122)
110 bin_122 K01601 scaffold_4035 3300002026_MIS_10004036 MIS_1000403617 3300002026_MIS_1000403617 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria;Candidatus Accumulibacter Autotrophy RuBisCo Betaproteobacteria;Candidatus Accumulibacter (bin_122)
111 bin_122 K01601 scaffold_4035 3300002026_MIS_10004036 MIS_1000403617 3300002026_MIS_1000403617 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria;Candidatus Accumulibacter Autotrophy RuBisCo Betaproteobacteria;Candidatus Accumulibacter (bin_122)
112 bin_122 K01601 scaffold_4035 3300002026_MIS_10004036 MIS_1000403617 3300002026_MIS_1000403617 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria;Candidatus Accumulibacter Autotrophy RuBisCo Betaproteobacteria;Candidatus Accumulibacter (bin_122)
113 bin_122 K01601 scaffold_4035 3300002026_MIS_10004036 MIS_1000403617 3300002026_MIS_1000403617 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Candidatus Accumulibacter Autotrophy RuBisCo Betaproteobacteria;Candidatus Accumulibacter (bin_122)
114 bin_122 K01601 scaffold_4035 3300002026_MIS_10004036 MIS_1000403617 3300002026_MIS_1000403617 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria;Candidatus Accumulibacter Autotrophy RuBisCo Betaproteobacteria;Candidatus Accumulibacter (bin_122)
25 Bin_4_4-contigs K01601 scaffold_2547 3300002026_MIS_10002548 MIS_1000254814 3300002026_MIS_1000254814 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs)
26 Bin_4_4-contigs K01601 scaffold_2547 3300002026_MIS_10002548 MIS_1000254814 3300002026_MIS_1000254814 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs)
27 Bin_4_4-contigs K01601 scaffold_2547 3300002026_MIS_10002548 MIS_1000254814 3300002026_MIS_1000254814 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs)
28 Bin_4_4-contigs K01601 scaffold_2547 3300002026_MIS_10002548 MIS_1000254814 3300002026_MIS_1000254814 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.117 164.8 day Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs)
29 Bin_4_4-contigs K01601 scaffold_2547 3300002026_MIS_10002548 MIS_1000254814 3300002026_MIS_1000254814 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs)
30 Bin_4_4-contigs K01601 scaffold_2547 3300002026_MIS_10002548 MIS_1000254814 3300002026_MIS_1000254814 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (Bin_4_4-contigs)
73 bin_70 K01601 scaffold_2694 3300002026_MIS_10002695 MIS_100026955 3300002026_MIS_100026955 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.556 869.8 day Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (bin_70)
74 bin_70 K01601 scaffold_2694 3300002026_MIS_10002695 MIS_100026955 3300002026_MIS_100026955 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (bin_70)
75 bin_70 K01601 scaffold_2694 3300002026_MIS_10002695 MIS_100026955 3300002026_MIS_100026955 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (bin_70)
76 bin_70 K01601 scaffold_2694 3300002026_MIS_10002695 MIS_100026955 3300002026_MIS_100026955 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (bin_70)
77 bin_70 K01601 scaffold_2694 3300002026_MIS_10002695 MIS_100026955 3300002026_MIS_100026955 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (bin_70)
78 bin_70 K01601 scaffold_2694 3300002026_MIS_10002695 MIS_100026955 3300002026_MIS_100026955 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria;Hydrogenophaga Autotrophy RuBisCo Betaproteobacteria;Hydrogenophaga (bin_70)
49 bin_38 K01601 scaffold_31017 3300002026_MIS_10031018 MIS_100310181 3300002026_MIS_100310181 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_38)
50 bin_38 K01601 scaffold_31017 3300002026_MIS_10031018 MIS_100310181 3300002026_MIS_100310181 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_38)
51 bin_38 K01601 scaffold_31017 3300002026_MIS_10031018 MIS_100310181 3300002026_MIS_100310181 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_38)
52 bin_38 K01601 scaffold_31017 3300002026_MIS_10031018 MIS_100310181 3300002026_MIS_100310181 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_38)
53 bin_38 K01601 scaffold_31017 3300002026_MIS_10031018 MIS_100310181 3300002026_MIS_100310181 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.287 10107.8 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_38)
54 bin_38 K01601 scaffold_31017 3300002026_MIS_10031018 MIS_100310181 3300002026_MIS_100310181 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_38)
55 bin_44 K01601 scaffold_4459 3300002026_MIS_10004460 MIS_100044604 3300002026_MIS_100044604 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_44)
56 bin_44 K01601 scaffold_4459 3300002026_MIS_10004460 MIS_100044604 3300002026_MIS_100044604 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.582 26060.1 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_44)
57 bin_44 K01601 scaffold_4459 3300002026_MIS_10004460 MIS_100044604 3300002026_MIS_100044604 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_44)
58 bin_44 K01601 scaffold_4459 3300002026_MIS_10004460 MIS_100044604 3300002026_MIS_100044604 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_44)
59 bin_44 K01601 scaffold_4459 3300002026_MIS_10004460 MIS_100044604 3300002026_MIS_100044604 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.555 43462.7 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_44)
60 bin_44 K01601 scaffold_4459 3300002026_MIS_10004460 MIS_100044604 3300002026_MIS_100044604 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_44)
61 bin_46 K01601 scaffold_25826 3300002026_MIS_10025827 MIS_100258271 3300002026_MIS_100258271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
62 bin_46 K01601 scaffold_25826 3300002026_MIS_10025827 MIS_100258271 3300002026_MIS_100258271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
63 bin_46 K01601 scaffold_25826 3300002026_MIS_10025827 MIS_100258271 3300002026_MIS_100258271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.414 5234.7 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
68 bin_46 K01601 scaffold_25826 3300002026_MIS_10025827 MIS_100258271 3300002026_MIS_100258271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
69 bin_46 K01601 scaffold_25826 3300002026_MIS_10025827 MIS_100258271 3300002026_MIS_100258271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
72 bin_46 K01601 scaffold_25826 3300002026_MIS_10025827 MIS_100258271 3300002026_MIS_100258271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
64 bin_46 K01601 scaffold_10359 3300002026_MIS_10010360 MIS_1001036013 3300002026_MIS_1001036013 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
65 bin_46 K01601 scaffold_10359 3300002026_MIS_10010360 MIS_1001036013 3300002026_MIS_1001036013 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
66 bin_46 K01601 scaffold_10359 3300002026_MIS_10010360 MIS_1001036013 3300002026_MIS_1001036013 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
67 bin_46 K01601 scaffold_10359 3300002026_MIS_10010360 MIS_1001036013 3300002026_MIS_1001036013 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
70 bin_46 K01601 scaffold_10359 3300002026_MIS_10010360 MIS_1001036013 3300002026_MIS_1001036013 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
71 bin_46 K01601 scaffold_10359 3300002026_MIS_10010360 MIS_1001036013 3300002026_MIS_1001036013 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria;Rhodoferax Autotrophy RuBisCo Betaproteobacteria;Rhodoferax (bin_46)
19 Bin_4_3_4-contigs K01601 scaffold_10257 3300002026_MIS_10010258 MIS_100102587 3300002026_MIS_100102587 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Betaproteobacteria;Sulfuritalea Autotrophy RuBisCo Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs)
20 Bin_4_3_4-contigs K01601 scaffold_10257 3300002026_MIS_10010258 MIS_100102587 3300002026_MIS_100102587 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Betaproteobacteria;Sulfuritalea Autotrophy RuBisCo Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs)
21 Bin_4_3_4-contigs K01601 scaffold_10257 3300002026_MIS_10010258 MIS_100102587 3300002026_MIS_100102587 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Betaproteobacteria;Sulfuritalea Autotrophy RuBisCo Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs)
22 Bin_4_3_4-contigs K01601 scaffold_10257 3300002026_MIS_10010258 MIS_100102587 3300002026_MIS_100102587 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Betaproteobacteria;Sulfuritalea Autotrophy RuBisCo Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs)
23 Bin_4_3_4-contigs K01601 scaffold_10257 3300002026_MIS_10010258 MIS_100102587 3300002026_MIS_100102587 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night Betaproteobacteria;Sulfuritalea Autotrophy RuBisCo Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs)
24 Bin_4_3_4-contigs K01601 scaffold_10257 3300002026_MIS_10010258 MIS_100102587 3300002026_MIS_100102587 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Betaproteobacteria;Sulfuritalea Autotrophy RuBisCo Betaproteobacteria;Sulfuritalea (Bin_4_3_4-contigs)
157 bin_179 K01601 scaffold_33250 3300002026_MIS_10033251 MIS_100332512 3300002026_MIS_100332512 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day Chloroflexi;Anaerolinea Autotrophy RuBisCo Chloroflexi;Anaerolinea (bin_179)
158 bin_179 K01601 scaffold_33250 3300002026_MIS_10033251 MIS_100332512 3300002026_MIS_100332512 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Chloroflexi;Anaerolinea Autotrophy RuBisCo Chloroflexi;Anaerolinea (bin_179)
159 bin_179 K01601 scaffold_33250 3300002026_MIS_10033251 MIS_100332512 3300002026_MIS_100332512 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Chloroflexi;Anaerolinea Autotrophy RuBisCo Chloroflexi;Anaerolinea (bin_179)
160 bin_179 K01601 scaffold_33250 3300002026_MIS_10033251 MIS_100332512 3300002026_MIS_100332512 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Chloroflexi;Anaerolinea Autotrophy RuBisCo Chloroflexi;Anaerolinea (bin_179)
161 bin_179 K01601 scaffold_33250 3300002026_MIS_10033251 MIS_100332512 3300002026_MIS_100332512 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.167 207709.8 night Chloroflexi;Anaerolinea Autotrophy RuBisCo Chloroflexi;Anaerolinea (bin_179)
162 bin_179 K01601 scaffold_33250 3300002026_MIS_10033251 MIS_100332512 3300002026_MIS_100332512 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Chloroflexi;Anaerolinea Autotrophy RuBisCo Chloroflexi;Anaerolinea (bin_179)
79 bin_83 K14138 scaffold_14872 3300002026_MIS_10014873 MIS_100148732 3300002026_MIS_100148732 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 3.118 4248.7 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_83)
80 bin_83 K14138 scaffold_14872 3300002026_MIS_10014873 MIS_100148732 3300002026_MIS_100148732 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_83)
81 bin_83 K14138 scaffold_14872 3300002026_MIS_10014873 MIS_100148732 3300002026_MIS_100148732 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.345 3247.8 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_83)
82 bin_83 K14138 scaffold_14872 3300002026_MIS_10014873 MIS_100148732 3300002026_MIS_100148732 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.571 13375.9 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_83)
83 bin_83 K14138 scaffold_14872 3300002026_MIS_10014873 MIS_100148732 3300002026_MIS_100148732 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_83)
84 bin_83 K14138 scaffold_14872 3300002026_MIS_10014873 MIS_100148732 3300002026_MIS_100148732 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 0.0 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_83)
91 bin_101 K14138 scaffold_9940 3300002026_MIS_10009941 MIS_100099411 3300002026_MIS_100099411 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 0.0 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
92 bin_101 K14138 scaffold_9940 3300002026_MIS_10009941 MIS_100099411 3300002026_MIS_100099411 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
93 bin_101 K14138 scaffold_9940 3300002026_MIS_10009941 MIS_100099411 3300002026_MIS_100099411 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
95 bin_101 K14138 scaffold_9940 3300002026_MIS_10009941 MIS_100099411 3300002026_MIS_100099411 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.389 2228.8 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
96 bin_101 K14138 scaffold_9940 3300002026_MIS_10009941 MIS_100099411 3300002026_MIS_100099411 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 0.0 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
100 bin_101 K14138 scaffold_9940 3300002026_MIS_10009941 MIS_100099411 3300002026_MIS_100099411 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
94 bin_101 K14138 scaffold_5805 3300002026_MIS_10005806 MIS_1000580617 3300002026_MIS_1000580617 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 0.0 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
97 bin_101 K14138 scaffold_5805 3300002026_MIS_10005806 MIS_1000580617 3300002026_MIS_1000580617 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 0.0 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
98 bin_101 K14138 scaffold_5805 3300002026_MIS_10005806 MIS_1000580617 3300002026_MIS_1000580617 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 0.0 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
99 bin_101 K14138 scaffold_5805 3300002026_MIS_10005806 MIS_1000580617 3300002026_MIS_1000580617 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
101 bin_101 K14138 scaffold_5805 3300002026_MIS_10005806 MIS_1000580617 3300002026_MIS_1000580617 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
102 bin_101 K14138 scaffold_5805 3300002026_MIS_10005806 MIS_1000580617 3300002026_MIS_1000580617 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_101)
169 bin_204 K14138 scaffold_18420 3300002026_MIS_10018421 MIS_100184213 3300002026_MIS_100184213 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 0.0 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_204)
170 bin_204 K14138 scaffold_18420 3300002026_MIS_10018421 MIS_100184213 3300002026_MIS_100184213 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 1.569 8304.1 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_204)
171 bin_204 K14138 scaffold_18420 3300002026_MIS_10018421 MIS_100184213 3300002026_MIS_100184213 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 1.920 6825.1 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_204)
172 bin_204 K14138 scaffold_18420 3300002026_MIS_10018421 MIS_100184213 3300002026_MIS_100184213 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 1.637 6490.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_204)
173 bin_204 K14138 scaffold_18420 3300002026_MIS_10018421 MIS_100184213 3300002026_MIS_100184213 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 0.0 night Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_204)
174 bin_204 K14138 scaffold_18420 3300002026_MIS_10018421 MIS_100184213 3300002026_MIS_100184213 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 7.622 18544.9 day Deltaproteobacteria;Desulfobacteraceae Autotrophy WLP Deltaproteobacteria;Desulfobacteraceae (bin_204)
31 bin_26 K14138 scaffold_2091 3300002026_MIS_10002092 MIS_100020921 3300002026_MIS_100020921 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.197 15600.7 night Deltaproteobacteria;Desulfobacula Autotrophy WLP Deltaproteobacteria;Desulfobacula (bin_26)
32 bin_26 K14138 scaffold_2091 3300002026_MIS_10002092 MIS_100020921 3300002026_MIS_100020921 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 0.0 night Deltaproteobacteria;Desulfobacula Autotrophy WLP Deltaproteobacteria;Desulfobacula (bin_26)
33 bin_26 K14138 scaffold_2091 3300002026_MIS_10002092 MIS_100020921 3300002026_MIS_100020921 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.792 28010.7 day Deltaproteobacteria;Desulfobacula Autotrophy WLP Deltaproteobacteria;Desulfobacula (bin_26)
34 bin_26 K14138 scaffold_2091 3300002026_MIS_10002092 MIS_100020921 3300002026_MIS_100020921 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 0.0 day Deltaproteobacteria;Desulfobacula Autotrophy WLP Deltaproteobacteria;Desulfobacula (bin_26)
35 bin_26 K14138 scaffold_2091 3300002026_MIS_10002092 MIS_100020921 3300002026_MIS_100020921 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 0.0 day Deltaproteobacteria;Desulfobacula Autotrophy WLP Deltaproteobacteria;Desulfobacula (bin_26)
36 bin_26 K14138 scaffold_2091 3300002026_MIS_10002092 MIS_100020921 3300002026_MIS_100020921 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 0.0 night Deltaproteobacteria;Desulfobacula Autotrophy WLP Deltaproteobacteria;Desulfobacula (bin_26)
103 bin_102 K14138 scaffold_4017 3300002026_MIS_10004018 MIS_100040189 3300002026_MIS_100040189 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 0.0 night Deltaproteobacteria;Desulfobulbaceae Autotrophy WLP Deltaproteobacteria;Desulfobulbaceae (bin_102)
104 bin_102 K14138 scaffold_4017 3300002026_MIS_10004018 MIS_100040189 3300002026_MIS_100040189 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 0.0 day Deltaproteobacteria;Desulfobulbaceae Autotrophy WLP Deltaproteobacteria;Desulfobulbaceae (bin_102)
105 bin_102 K14138 scaffold_4017 3300002026_MIS_10004018 MIS_100040189 3300002026_MIS_100040189 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 0.0 night Deltaproteobacteria;Desulfobulbaceae Autotrophy WLP Deltaproteobacteria;Desulfobulbaceae (bin_102)
106 bin_102 K14138 scaffold_4017 3300002026_MIS_10004018 MIS_100040189 3300002026_MIS_100040189 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.346 4424.0 day Deltaproteobacteria;Desulfobulbaceae Autotrophy WLP Deltaproteobacteria;Desulfobulbaceae (bin_102)
107 bin_102 K14138 scaffold_4017 3300002026_MIS_10004018 MIS_100040189 3300002026_MIS_100040189 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 0.0 day Deltaproteobacteria;Desulfobulbaceae Autotrophy WLP Deltaproteobacteria;Desulfobulbaceae (bin_102)
108 bin_102 K14138 scaffold_4017 3300002026_MIS_10004018 MIS_100040189 3300002026_MIS_100040189 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 0.0 night Deltaproteobacteria;Desulfobulbaceae Autotrophy WLP Deltaproteobacteria;Desulfobulbaceae (bin_102)
37 bin_35 K01601 scaffold_81988 3300002026_MIS_10039712 MIS_100397121 3300002026_MIS_100397121 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
40 bin_35 K01601 scaffold_81988 3300002026_MIS_10039712 MIS_100397121 3300002026_MIS_100397121 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
43 bin_35 K01601 scaffold_81988 3300002026_MIS_10039712 MIS_100397121 3300002026_MIS_100397121 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 6.500 11500.8 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
45 bin_35 K01601 scaffold_81988 3300002026_MIS_10039712 MIS_100397121 3300002026_MIS_100397121 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
46 bin_35 K01601 scaffold_81988 3300002026_MIS_10039712 MIS_100397121 3300002026_MIS_100397121 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 9.383 49736.1 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
48 bin_35 K01601 scaffold_81988 3300002026_MIS_10039712 MIS_100397121 3300002026_MIS_100397121 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
38 bin_35 K01601 scaffold_9977 3300002026_MIS_10009978 MIS_100099783 3300002026_MIS_100099783 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
39 bin_35 K01601 scaffold_9977 3300002026_MIS_10009978 MIS_100099783 3300002026_MIS_100099783 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
41 bin_35 K01601 scaffold_9977 3300002026_MIS_10009978 MIS_100099783 3300002026_MIS_100099783 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.352 623.7 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
42 bin_35 K01601 scaffold_9977 3300002026_MIS_10009978 MIS_100099783 3300002026_MIS_100099783 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.190 2277.3 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
44 bin_35 K01601 scaffold_9977 3300002026_MIS_10009978 MIS_100099783 3300002026_MIS_100099783 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
47 bin_35 K01601 scaffold_9977 3300002026_MIS_10009978 MIS_100099783 3300002026_MIS_100099783 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_35)
163 bin_188 K01601 scaffold_11622 3300002026_MIS_10011623 MIS_1001162314 3300002026_MIS_1001162314 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 4.611 17593.5 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_188)
164 bin_188 K01601 scaffold_11622 3300002026_MIS_10011623 MIS_1001162314 3300002026_MIS_1001162314 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_188)
165 bin_188 K01601 scaffold_11622 3300002026_MIS_10011623 MIS_1001162314 3300002026_MIS_1001162314 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_188)
166 bin_188 K01601 scaffold_11622 3300002026_MIS_10011623 MIS_1001162314 3300002026_MIS_1001162314 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 1.142 23991.4 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_188)
167 bin_188 K01601 scaffold_11622 3300002026_MIS_10011623 MIS_1001162314 3300002026_MIS_1001162314 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 2.621 46227.8 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_188)
168 bin_188 K01601 scaffold_11622 3300002026_MIS_10011623 MIS_1001162314 3300002026_MIS_1001162314 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 1.939 41680.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_188)
175 bin_234 K01601 scaffold_33340 3300002026_MIS_10033341 MIS_100333411 3300002026_MIS_100333411 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
176 bin_234 K01601 scaffold_33340 3300002026_MIS_10033341 MIS_100333411 3300002026_MIS_100333411 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
177 bin_234 K01601 scaffold_33340 3300002026_MIS_10033341 MIS_100333411 3300002026_MIS_100333411 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
182 bin_234 K01601 scaffold_33340 3300002026_MIS_10033341 MIS_100333411 3300002026_MIS_100333411 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
184 bin_234 K01601 scaffold_33340 3300002026_MIS_10033341 MIS_100333411 3300002026_MIS_100333411 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
186 bin_234 K01601 scaffold_33340 3300002026_MIS_10033341 MIS_100333411 3300002026_MIS_100333411 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
178 bin_234 K01601 scaffold_23905 3300002026_MIS_10023906 MIS_100239066 3300002026_MIS_100239066 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
179 bin_234 K01601 scaffold_23905 3300002026_MIS_10023906 MIS_100239066 3300002026_MIS_100239066 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
180 bin_234 K01601 scaffold_23905 3300002026_MIS_10023906 MIS_100239066 3300002026_MIS_100239066 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
181 bin_234 K01601 scaffold_23905 3300002026_MIS_10023906 MIS_100239066 3300002026_MIS_100239066 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
183 bin_234 K01601 scaffold_23905 3300002026_MIS_10023906 MIS_100239066 3300002026_MIS_100239066 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
185 bin_234 K01601 scaffold_23905 3300002026_MIS_10023906 MIS_100239066 3300002026_MIS_100239066 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_234)
187 bin_247 K01601 scaffold_22140 3300002026_MIS_10022141 MIS_100221414 3300002026_MIS_100221414 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
191 bin_247 K01601 scaffold_22140 3300002026_MIS_10022141 MIS_100221414 3300002026_MIS_100221414 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
193 bin_247 K01601 scaffold_22140 3300002026_MIS_10022141 MIS_100221414 3300002026_MIS_100221414 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
194 bin_247 K01601 scaffold_22140 3300002026_MIS_10022141 MIS_100221414 3300002026_MIS_100221414 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
197 bin_247 K01601 scaffold_22140 3300002026_MIS_10022141 MIS_100221414 3300002026_MIS_100221414 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
198 bin_247 K01601 scaffold_22140 3300002026_MIS_10022141 MIS_100221414 3300002026_MIS_100221414 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
188 bin_247 K01601 scaffold_14809 3300002026_MIS_10014810 MIS_100148108 3300002026_MIS_100148108 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
189 bin_247 K01601 scaffold_14809 3300002026_MIS_10014810 MIS_100148108 3300002026_MIS_100148108 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
190 bin_247 K01601 scaffold_14809 3300002026_MIS_10014810 MIS_100148108 3300002026_MIS_100148108 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
192 bin_247 K01601 scaffold_14809 3300002026_MIS_10014810 MIS_100148108 3300002026_MIS_100148108 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
195 bin_247 K01601 scaffold_14809 3300002026_MIS_10014810 MIS_100148108 3300002026_MIS_100148108 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
196 bin_247 K01601 scaffold_14809 3300002026_MIS_10014810 MIS_100148108 3300002026_MIS_100148108 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Gammaproteobacteria;Thioploca Autotrophy RuBisCo Gammaproteobacteria;Thioploca (bin_247)
145 bin_158 K01601 scaffold_9405 3300002026_MIS_10009406 MIS_100094068 3300002026_MIS_100094068 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
146 bin_158 K01601 scaffold_9405 3300002026_MIS_10009406 MIS_100094068 3300002026_MIS_100094068 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.113 42970.2 day Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
147 bin_158 K01601 scaffold_9405 3300002026_MIS_10009406 MIS_100094068 3300002026_MIS_100094068 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.403 345047.7 night Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
154 bin_158 K01601 scaffold_9405 3300002026_MIS_10009406 MIS_100094068 3300002026_MIS_100094068 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.189 6526.5 night Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
155 bin_158 K01601 scaffold_9405 3300002026_MIS_10009406 MIS_100094068 3300002026_MIS_100094068 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.996 51770.2 night Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
156 bin_158 K01601 scaffold_9405 3300002026_MIS_10009406 MIS_100094068 3300002026_MIS_100094068 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
148 bin_158 K01601 scaffold_25649 3300002026_MIS_10025650 MIS_100256501 3300002026_MIS_100256501 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 0.0 day Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
149 bin_158 K01601 scaffold_25649 3300002026_MIS_10025650 MIS_100256501 3300002026_MIS_100256501 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 0.0 day Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
150 bin_158 K01601 scaffold_25649 3300002026_MIS_10025650 MIS_100256501 3300002026_MIS_100256501 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 0.0 night Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
151 bin_158 K01601 scaffold_25649 3300002026_MIS_10025650 MIS_100256501 3300002026_MIS_100256501 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 0.0 night Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
152 bin_158 K01601 scaffold_25649 3300002026_MIS_10025650 MIS_100256501 3300002026_MIS_100256501 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 0.0 day Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
153 bin_158 K01601 scaffold_25649 3300002026_MIS_10025650 MIS_100256501 3300002026_MIS_100256501 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 0.0 night Gammaproteobacteria;Thiotrichaceae Autotrophy RuBisCo Gammaproteobacteria;Thiotrichaceae (bin_158)
223 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239610 3300002026_MIS_1001239610 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
224 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239610 3300002026_MIS_1001239610 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
225 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239610 3300002026_MIS_1001239610 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
343 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239610 3300002026_MIS_1001239610 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
456 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239610 3300002026_MIS_1001239610 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.249 NA night NA Autotrophy RuBisCo NA
457 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239610 3300002026_MIS_1001239610 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.113 NA day NA Autotrophy RuBisCo NA
226 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239619 3300002026_MIS_1001239619 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
227 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239619 3300002026_MIS_1001239619 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
344 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239619 3300002026_MIS_1001239619 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
345 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239619 3300002026_MIS_1001239619 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
346 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239619 3300002026_MIS_1001239619 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
464 NA K01601 scaffold_12395 3300002026_MIS_10012396 MIS_1001239619 3300002026_MIS_1001239619 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
228 NA K01601 scaffold_126315 3300002027_MIS_10086049 MIS_100860492 3300002027_MIS_100860492 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
229 NA K01601 scaffold_126315 3300002027_MIS_10086049 MIS_100860492 3300002027_MIS_100860492 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
230 NA K01601 scaffold_126315 3300002027_MIS_10086049 MIS_100860492 3300002027_MIS_100860492 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.890 NA night NA Autotrophy RuBisCo NA
231 NA K01601 scaffold_126315 3300002027_MIS_10086049 MIS_100860492 3300002027_MIS_100860492 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.134 NA day NA Autotrophy RuBisCo NA
347 NA K01601 scaffold_126315 3300002027_MIS_10086049 MIS_100860492 3300002027_MIS_100860492 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.262 NA day NA Autotrophy RuBisCo NA
348 NA K01601 scaffold_126315 3300002027_MIS_10086049 MIS_100860492 3300002027_MIS_100860492 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
232 NA K01601 scaffold_131981 3300002027_MIS_10091689 MIS_100916892 3300002027_MIS_100916892 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
233 NA K01601 scaffold_131981 3300002027_MIS_10091689 MIS_100916892 3300002027_MIS_100916892 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
234 NA K01601 scaffold_131981 3300002027_MIS_10091689 MIS_100916892 3300002027_MIS_100916892 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
235 NA K01601 scaffold_131981 3300002027_MIS_10091689 MIS_100916892 3300002027_MIS_100916892 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
236 NA K01601 scaffold_131981 3300002027_MIS_10091689 MIS_100916892 3300002027_MIS_100916892 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
237 NA K01601 scaffold_131981 3300002027_MIS_10091689 MIS_100916892 3300002027_MIS_100916892 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
238 NA K01601 scaffold_134623 3300002027_MIS_10094324 MIS_100943241 3300002027_MIS_100943241 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
239 NA K01601 scaffold_134623 3300002027_MIS_10094324 MIS_100943241 3300002027_MIS_100943241 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
240 NA K01601 scaffold_134623 3300002027_MIS_10094324 MIS_100943241 3300002027_MIS_100943241 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
241 NA K01601 scaffold_134623 3300002027_MIS_10094324 MIS_100943241 3300002027_MIS_100943241 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
242 NA K01601 scaffold_134623 3300002027_MIS_10094324 MIS_100943241 3300002027_MIS_100943241 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
243 NA K01601 scaffold_134623 3300002027_MIS_10094324 MIS_100943241 3300002027_MIS_100943241 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
244 NA K01601 scaffold_229469 3300002024_MIS_1003372 MIS_10033722 3300002024_MIS_10033722 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
246 NA K01601 scaffold_229469 3300002024_MIS_1003372 MIS_10033722 3300002024_MIS_10033722 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
247 NA K01601 scaffold_229469 3300002024_MIS_1003372 MIS_10033722 3300002024_MIS_10033722 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
248 NA K01601 scaffold_229469 3300002024_MIS_1003372 MIS_10033722 3300002024_MIS_10033722 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
330 NA K01601 scaffold_229469 3300002024_MIS_1003372 MIS_10033722 3300002024_MIS_10033722 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
364 NA K01601 scaffold_229469 3300002024_MIS_1003372 MIS_10033722 3300002024_MIS_10033722 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
245 NA K01601 scaffold_298773 3300002024_MIS_1066859 MIS_10668594 3300002024_MIS_10668594 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
365 NA K01601 scaffold_298773 3300002024_MIS_1066859 MIS_10668594 3300002024_MIS_10668594 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
367 NA K01601 scaffold_298773 3300002024_MIS_1066859 MIS_10668594 3300002024_MIS_10668594 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
368 NA K01601 scaffold_298773 3300002024_MIS_1066859 MIS_10668594 3300002024_MIS_10668594 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
444 NA K01601 scaffold_298773 3300002024_MIS_1066859 MIS_10668594 3300002024_MIS_10668594 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
485 NA K01601 scaffold_298773 3300002024_MIS_1066859 MIS_10668594 3300002024_MIS_10668594 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
249 NA K01601 scaffold_230367 3300002024_MIS_1004180 MIS_10041801 3300002024_MIS_10041801 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
371 NA K01601 scaffold_230367 3300002024_MIS_1004180 MIS_10041801 3300002024_MIS_10041801 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
493 NA K01601 scaffold_230367 3300002024_MIS_1004180 MIS_10041801 3300002024_MIS_10041801 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 23.123 NA night NA Autotrophy RuBisCo NA
494 NA K01601 scaffold_230367 3300002024_MIS_1004180 MIS_10041801 3300002024_MIS_10041801 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 5.561 NA day NA Autotrophy RuBisCo NA
495 NA K01601 scaffold_230367 3300002024_MIS_1004180 MIS_10041801 3300002024_MIS_10041801 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 5.090 NA night NA Autotrophy RuBisCo NA
496 NA K01601 scaffold_230367 3300002024_MIS_1004180 MIS_10041801 3300002024_MIS_10041801 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
250 NA K01601 scaffold_138627 3300002027_MIS_10098312 MIS_100983122 3300002027_MIS_100983122 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
372 NA K01601 scaffold_138627 3300002027_MIS_10098312 MIS_100983122 3300002027_MIS_100983122 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
373 NA K01601 scaffold_138627 3300002027_MIS_10098312 MIS_100983122 3300002027_MIS_100983122 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
374 NA K01601 scaffold_138627 3300002027_MIS_10098312 MIS_100983122 3300002027_MIS_100983122 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
375 NA K01601 scaffold_138627 3300002027_MIS_10098312 MIS_100983122 3300002027_MIS_100983122 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
376 NA K01601 scaffold_138627 3300002027_MIS_10098312 MIS_100983122 3300002027_MIS_100983122 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
251 NA K01601 scaffold_102245 3300002027_MIS_10062159 MIS_100621592 3300002027_MIS_100621592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
252 NA K01601 scaffold_102245 3300002027_MIS_10062159 MIS_100621592 3300002027_MIS_100621592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
253 NA K01601 scaffold_102245 3300002027_MIS_10062159 MIS_100621592 3300002027_MIS_100621592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
254 NA K01601 scaffold_102245 3300002027_MIS_10062159 MIS_100621592 3300002027_MIS_100621592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
255 NA K01601 scaffold_102245 3300002027_MIS_10062159 MIS_100621592 3300002027_MIS_100621592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
256 NA K01601 scaffold_102245 3300002027_MIS_10062159 MIS_100621592 3300002027_MIS_100621592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
257 NA K01601 scaffold_306741 3300002024_MIS_1074269 MIS_10742692 3300002024_MIS_10742692 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
258 NA K01601 scaffold_306741 3300002024_MIS_1074269 MIS_10742692 3300002024_MIS_10742692 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
259 NA K01601 scaffold_306741 3300002024_MIS_1074269 MIS_10742692 3300002024_MIS_10742692 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
377 NA K01601 scaffold_306741 3300002024_MIS_1074269 MIS_10742692 3300002024_MIS_10742692 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
497 NA K01601 scaffold_306741 3300002024_MIS_1074269 MIS_10742692 3300002024_MIS_10742692 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
561 NA K01601 scaffold_306741 3300002024_MIS_1074269 MIS_10742692 3300002024_MIS_10742692 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
260 NA K01601 scaffold_47788 3300002027_MIS_10010557 MIS_100105571 3300002027_MIS_100105571 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
380 NA K01601 scaffold_47788 3300002027_MIS_10010557 MIS_100105571 3300002027_MIS_100105571 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
382 NA K01601 scaffold_47788 3300002027_MIS_10010557 MIS_100105571 3300002027_MIS_100105571 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
383 NA K01601 scaffold_47788 3300002027_MIS_10010557 MIS_100105571 3300002027_MIS_100105571 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
384 NA K01601 scaffold_47788 3300002027_MIS_10010557 MIS_100105571 3300002027_MIS_100105571 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
385 NA K01601 scaffold_47788 3300002027_MIS_10010557 MIS_100105571 3300002027_MIS_100105571 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
261 NA K01601 scaffold_240246 3300002024_MIS_1013131 MIS_10131311 3300002024_MIS_10131311 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
262 NA K01601 scaffold_240246 3300002024_MIS_1013131 MIS_10131311 3300002024_MIS_10131311 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
263 NA K01601 scaffold_240246 3300002024_MIS_1013131 MIS_10131311 3300002024_MIS_10131311 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
264 NA K01601 scaffold_240246 3300002024_MIS_1013131 MIS_10131311 3300002024_MIS_10131311 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
265 NA K01601 scaffold_240246 3300002024_MIS_1013131 MIS_10131311 3300002024_MIS_10131311 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
266 NA K01601 scaffold_240246 3300002024_MIS_1013131 MIS_10131311 3300002024_MIS_10131311 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
267 NA K01601 scaffold_246344 3300002024_MIS_1018687 MIS_10186873 3300002024_MIS_10186873 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
268 NA K01601 scaffold_246344 3300002024_MIS_1018687 MIS_10186873 3300002024_MIS_10186873 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
269 NA K01601 scaffold_246344 3300002024_MIS_1018687 MIS_10186873 3300002024_MIS_10186873 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
270 NA K01601 scaffold_246344 3300002024_MIS_1018687 MIS_10186873 3300002024_MIS_10186873 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
271 NA K01601 scaffold_246344 3300002024_MIS_1018687 MIS_10186873 3300002024_MIS_10186873 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
272 NA K01601 scaffold_246344 3300002024_MIS_1018687 MIS_10186873 3300002024_MIS_10186873 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
273 NA K01601 scaffold_25291 3300002026_MIS_10025292 MIS_100252926 3300002026_MIS_100252926 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
395 NA K01601 scaffold_25291 3300002026_MIS_10025292 MIS_100252926 3300002026_MIS_100252926 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
504 NA K01601 scaffold_25291 3300002026_MIS_10025292 MIS_100252926 3300002026_MIS_100252926 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
518 NA K01601 scaffold_25291 3300002026_MIS_10025292 MIS_100252926 3300002026_MIS_100252926 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
519 NA K01601 scaffold_25291 3300002026_MIS_10025292 MIS_100252926 3300002026_MIS_100252926 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
520 NA K01601 scaffold_25291 3300002026_MIS_10025292 MIS_100252926 3300002026_MIS_100252926 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
274 NA K01601 scaffold_157349 3300002027_MIS_10117005 MIS_101170052 3300002027_MIS_101170052 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.150 NA night NA Autotrophy RuBisCo NA
396 NA K01601 scaffold_157349 3300002027_MIS_10117005 MIS_101170052 3300002027_MIS_101170052 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
397 NA K01601 scaffold_157349 3300002027_MIS_10117005 MIS_101170052 3300002027_MIS_101170052 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
398 NA K01601 scaffold_157349 3300002027_MIS_10117005 MIS_101170052 3300002027_MIS_101170052 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.604 NA day NA Autotrophy RuBisCo NA
399 NA K01601 scaffold_157349 3300002027_MIS_10117005 MIS_101170052 3300002027_MIS_101170052 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
400 NA K01601 scaffold_157349 3300002027_MIS_10117005 MIS_101170052 3300002027_MIS_101170052 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
275 NA K01601 scaffold_107125 3300002027_MIS_10066993 MIS_100669932 3300002027_MIS_100669932 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.209 NA night NA Autotrophy RuBisCo NA
276 NA K01601 scaffold_107125 3300002027_MIS_10066993 MIS_100669932 3300002027_MIS_100669932 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.599 NA day NA Autotrophy RuBisCo NA
277 NA K01601 scaffold_107125 3300002027_MIS_10066993 MIS_100669932 3300002027_MIS_100669932 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.149 NA night NA Autotrophy RuBisCo NA
278 NA K01601 scaffold_107125 3300002027_MIS_10066993 MIS_100669932 3300002027_MIS_100669932 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
279 NA K01601 scaffold_107125 3300002027_MIS_10066993 MIS_100669932 3300002027_MIS_100669932 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
280 NA K01601 scaffold_107125 3300002027_MIS_10066993 MIS_100669932 3300002027_MIS_100669932 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
281 NA K01601 scaffold_110666 3300002027_MIS_10070494 MIS_100704944 3300002027_MIS_100704944 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
282 NA K01601 scaffold_110666 3300002027_MIS_10070494 MIS_100704944 3300002027_MIS_100704944 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
283 NA K01601 scaffold_110666 3300002027_MIS_10070494 MIS_100704944 3300002027_MIS_100704944 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
284 NA K01601 scaffold_110666 3300002027_MIS_10070494 MIS_100704944 3300002027_MIS_100704944 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
285 NA K01601 scaffold_110666 3300002027_MIS_10070494 MIS_100704944 3300002027_MIS_100704944 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
286 NA K01601 scaffold_110666 3300002027_MIS_10070494 MIS_100704944 3300002027_MIS_100704944 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
287 NA K01601 scaffold_256423 3300002024_MIS_1027873 MIS_10278731 3300002024_MIS_10278731 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
288 NA K01601 scaffold_256423 3300002024_MIS_1027873 MIS_10278731 3300002024_MIS_10278731 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
331 NA K01601 scaffold_256423 3300002024_MIS_1027873 MIS_10278731 3300002024_MIS_10278731 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.363 NA night NA Autotrophy RuBisCo NA
332 NA K01601 scaffold_256423 3300002024_MIS_1027873 MIS_10278731 3300002024_MIS_10278731 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
407 NA K01601 scaffold_256423 3300002024_MIS_1027873 MIS_10278731 3300002024_MIS_10278731 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
487 NA K01601 scaffold_256423 3300002024_MIS_1027873 MIS_10278731 3300002024_MIS_10278731 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
289 NA K01601 scaffold_332149 3300002024_MIS_1098114 MIS_10981141 3300002024_MIS_10981141 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.276 NA day NA Autotrophy RuBisCo NA
408 NA K01601 scaffold_332149 3300002024_MIS_1098114 MIS_10981141 3300002024_MIS_10981141 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 1.872 NA night NA Autotrophy RuBisCo NA
409 NA K01601 scaffold_332149 3300002024_MIS_1098114 MIS_10981141 3300002024_MIS_10981141 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
486 NA K01601 scaffold_332149 3300002024_MIS_1098114 MIS_10981141 3300002024_MIS_10981141 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
514 NA K01601 scaffold_332149 3300002024_MIS_1098114 MIS_10981141 3300002024_MIS_10981141 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
515 NA K01601 scaffold_332149 3300002024_MIS_1098114 MIS_10981141 3300002024_MIS_10981141 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
290 NA K01601 scaffold_61936 3300002027_MIS_10023271 MIS_100232713 3300002027_MIS_100232713 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
410 NA K01601 scaffold_61936 3300002027_MIS_10023271 MIS_100232713 3300002027_MIS_100232713 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.643 NA day NA Autotrophy RuBisCo NA
530 NA K01601 scaffold_61936 3300002027_MIS_10023271 MIS_100232713 3300002027_MIS_100232713 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
570 NA K01601 scaffold_61936 3300002027_MIS_10023271 MIS_100232713 3300002027_MIS_100232713 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.721 NA night NA Autotrophy RuBisCo NA
679 NA K01601 scaffold_61936 3300002027_MIS_10023271 MIS_100232713 3300002027_MIS_100232713 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.546 NA night NA Autotrophy RuBisCo NA
697 NA K01601 scaffold_61936 3300002027_MIS_10023271 MIS_100232713 3300002027_MIS_100232713 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
291 NA K01601 scaffold_91808 3300002027_MIS_10051865 MIS_100518657 3300002027_MIS_100518657 Ribulose bisphosphate carboxylase large chain, N-terminal domain pfam02788 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
517 NA K01601 scaffold_91808 3300002027_MIS_10051865 MIS_100518657 3300002027_MIS_100518657 Ribulose bisphosphate carboxylase large chain, N-terminal domain pfam02788 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
528 NA K01601 scaffold_91808 3300002027_MIS_10051865 MIS_100518657 3300002027_MIS_100518657 Ribulose bisphosphate carboxylase large chain, N-terminal domain pfam02788 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
532 NA K01601 scaffold_91808 3300002027_MIS_10051865 MIS_100518657 3300002027_MIS_100518657 Ribulose bisphosphate carboxylase large chain, N-terminal domain pfam02788 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
551 NA K01601 scaffold_91808 3300002027_MIS_10051865 MIS_100518657 3300002027_MIS_100518657 Ribulose bisphosphate carboxylase large chain, N-terminal domain pfam02788 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
698 NA K01601 scaffold_91808 3300002027_MIS_10051865 MIS_100518657 3300002027_MIS_100518657 Ribulose bisphosphate carboxylase large chain, N-terminal domain pfam02788 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
292 NA K01601 scaffold_92128 3300002027_MIS_10052180 MIS_100521803 3300002027_MIS_100521803 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
333 NA K01601 scaffold_92128 3300002027_MIS_10052180 MIS_100521803 3300002027_MIS_100521803 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
414 NA K01601 scaffold_92128 3300002027_MIS_10052180 MIS_100521803 3300002027_MIS_100521803 NA NA rbcL Carbon metabolism cDNA 2012-1D 3.162 NA day NA Autotrophy RuBisCo NA
415 NA K01601 scaffold_92128 3300002027_MIS_10052180 MIS_100521803 3300002027_MIS_100521803 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
479 NA K01601 scaffold_92128 3300002027_MIS_10052180 MIS_100521803 3300002027_MIS_100521803 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
537 NA K01601 scaffold_92128 3300002027_MIS_10052180 MIS_100521803 3300002027_MIS_100521803 NA NA rbcL Carbon metabolism cDNA 2012-5N 2.630 NA night NA Autotrophy RuBisCo NA
293 NA K01601 scaffold_164906 3300002027_MIS_10124554 MIS_101245541 3300002027_MIS_101245541 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
294 NA K01601 scaffold_164906 3300002027_MIS_10124554 MIS_101245541 3300002027_MIS_101245541 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
334 NA K01601 scaffold_164906 3300002027_MIS_10124554 MIS_101245541 3300002027_MIS_101245541 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
416 NA K01601 scaffold_164906 3300002027_MIS_10124554 MIS_101245541 3300002027_MIS_101245541 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
417 NA K01601 scaffold_164906 3300002027_MIS_10124554 MIS_101245541 3300002027_MIS_101245541 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
418 NA K01601 scaffold_164906 3300002027_MIS_10124554 MIS_101245541 3300002027_MIS_101245541 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
295 NA K01601 scaffold_115554 3300002027_MIS_10075335 MIS_100753353 3300002027_MIS_100753353 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
296 NA K01601 scaffold_115554 3300002027_MIS_10075335 MIS_100753353 3300002027_MIS_100753353 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.637 NA night NA Autotrophy RuBisCo NA
297 NA K01601 scaffold_115554 3300002027_MIS_10075335 MIS_100753353 3300002027_MIS_100753353 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
298 NA K01601 scaffold_115554 3300002027_MIS_10075335 MIS_100753353 3300002027_MIS_100753353 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
335 NA K01601 scaffold_115554 3300002027_MIS_10075335 MIS_100753353 3300002027_MIS_100753353 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
336 NA K01601 scaffold_115554 3300002027_MIS_10075335 MIS_100753353 3300002027_MIS_100753353 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
299 NA K01601 scaffold_257462 3300002024_MIS_1028812 MIS_10288123 3300002024_MIS_10288123 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 3.725 NA night NA Autotrophy RuBisCo NA
300 NA K01601 scaffold_257462 3300002024_MIS_1028812 MIS_10288123 3300002024_MIS_10288123 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
301 NA K01601 scaffold_257462 3300002024_MIS_1028812 MIS_10288123 3300002024_MIS_10288123 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 4.920 NA night NA Autotrophy RuBisCo NA
302 NA K01601 scaffold_257462 3300002024_MIS_1028812 MIS_10288123 3300002024_MIS_10288123 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
419 NA K01601 scaffold_257462 3300002024_MIS_1028812 MIS_10288123 3300002024_MIS_10288123 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 2.986 NA day NA Autotrophy RuBisCo NA
499 NA K01601 scaffold_257462 3300002024_MIS_1028812 MIS_10288123 3300002024_MIS_10288123 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
303 NA K01601 scaffold_54052 3300002027_MIS_10016079 MIS_100160793 3300002027_MIS_100160793 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
304 NA K01601 scaffold_54052 3300002027_MIS_10016079 MIS_100160793 3300002027_MIS_100160793 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
420 NA K01601 scaffold_54052 3300002027_MIS_10016079 MIS_100160793 3300002027_MIS_100160793 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
421 NA K01601 scaffold_54052 3300002027_MIS_10016079 MIS_100160793 3300002027_MIS_100160793 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
422 NA K01601 scaffold_54052 3300002027_MIS_10016079 MIS_100160793 3300002027_MIS_100160793 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
423 NA K01601 scaffold_54052 3300002027_MIS_10016079 MIS_100160793 3300002027_MIS_100160793 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
305 NA K01601 scaffold_116244 3300002027_MIS_10076024 MIS_100760243 3300002027_MIS_100760243 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
337 NA K01601 scaffold_116244 3300002027_MIS_10076024 MIS_100760243 3300002027_MIS_100760243 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
338 NA K01601 scaffold_116244 3300002027_MIS_10076024 MIS_100760243 3300002027_MIS_100760243 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.341 NA day NA Autotrophy RuBisCo NA
339 NA K01601 scaffold_116244 3300002027_MIS_10076024 MIS_100760243 3300002027_MIS_100760243 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.189 NA night NA Autotrophy RuBisCo NA
340 NA K01601 scaffold_116244 3300002027_MIS_10076024 MIS_100760243 3300002027_MIS_100760243 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 1.248 NA night NA Autotrophy RuBisCo NA
341 NA K01601 scaffold_116244 3300002027_MIS_10076024 MIS_100760243 3300002027_MIS_100760243 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.223 NA day NA Autotrophy RuBisCo NA
306 NA K01601 scaffold_218570 3300002027_MIS_10178190 MIS_101781901 3300002027_MIS_101781901 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
307 NA K01601 scaffold_218570 3300002027_MIS_10178190 MIS_101781901 3300002027_MIS_101781901 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
349 NA K01601 scaffold_218570 3300002027_MIS_10178190 MIS_101781901 3300002027_MIS_101781901 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
350 NA K01601 scaffold_218570 3300002027_MIS_10178190 MIS_101781901 3300002027_MIS_101781901 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
351 NA K01601 scaffold_218570 3300002027_MIS_10178190 MIS_101781901 3300002027_MIS_101781901 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
469 NA K01601 scaffold_218570 3300002027_MIS_10178190 MIS_101781901 3300002027_MIS_101781901 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
308 NA K01601 scaffold_357016 3300002024_MIS_1121608 MIS_11216081 3300002024_MIS_11216081 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
309 NA K01601 scaffold_357016 3300002024_MIS_1121608 MIS_11216081 3300002024_MIS_11216081 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
311 NA K01601 scaffold_357016 3300002024_MIS_1121608 MIS_11216081 3300002024_MIS_11216081 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
391 NA K01601 scaffold_357016 3300002024_MIS_1121608 MIS_11216081 3300002024_MIS_11216081 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
433 NA K01601 scaffold_357016 3300002024_MIS_1121608 MIS_11216081 3300002024_MIS_11216081 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
434 NA K01601 scaffold_357016 3300002024_MIS_1121608 MIS_11216081 3300002024_MIS_11216081 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
310 NA K01601 scaffold_188728 3300002027_MIS_10148360 MIS_101483601 3300002027_MIS_101483601 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
312 NA K01601 scaffold_188728 3300002027_MIS_10148360 MIS_101483601 3300002027_MIS_101483601 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
313 NA K01601 scaffold_188728 3300002027_MIS_10148360 MIS_101483601 3300002027_MIS_101483601 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.556 NA day NA Autotrophy RuBisCo NA
314 NA K01601 scaffold_188728 3300002027_MIS_10148360 MIS_101483601 3300002027_MIS_101483601 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
315 NA K01601 scaffold_188728 3300002027_MIS_10148360 MIS_101483601 3300002027_MIS_101483601 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
342 NA K01601 scaffold_188728 3300002027_MIS_10148360 MIS_101483601 3300002027_MIS_101483601 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
316 NA K01601 scaffold_188833 3300002027_MIS_10148465 MIS_101484651 3300002027_MIS_101484651 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
438 NA K01601 scaffold_188833 3300002027_MIS_10148465 MIS_101484651 3300002027_MIS_101484651 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
439 NA K01601 scaffold_188833 3300002027_MIS_10148465 MIS_101484651 3300002027_MIS_101484651 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
440 NA K01601 scaffold_188833 3300002027_MIS_10148465 MIS_101484651 3300002027_MIS_101484651 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
441 NA K01601 scaffold_188833 3300002027_MIS_10148465 MIS_101484651 3300002027_MIS_101484651 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
442 NA K01601 scaffold_188833 3300002027_MIS_10148465 MIS_101484651 3300002027_MIS_101484651 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
317 NA K01601 scaffold_117569 3300002027_MIS_10077340 MIS_100773402 3300002027_MIS_100773402 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
318 NA K01601 scaffold_117569 3300002027_MIS_10077340 MIS_100773402 3300002027_MIS_100773402 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
319 NA K01601 scaffold_117569 3300002027_MIS_10077340 MIS_100773402 3300002027_MIS_100773402 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
320 NA K01601 scaffold_117569 3300002027_MIS_10077340 MIS_100773402 3300002027_MIS_100773402 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
321 NA K01601 scaffold_117569 3300002027_MIS_10077340 MIS_100773402 3300002027_MIS_100773402 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
322 NA K01601 scaffold_117569 3300002027_MIS_10077340 MIS_100773402 3300002027_MIS_100773402 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.495 NA night NA Autotrophy RuBisCo NA
323 NA K01601 scaffold_193877 3300002027_MIS_10153507 MIS_101535071 3300002027_MIS_101535071 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
443 NA K01601 scaffold_193877 3300002027_MIS_10153507 MIS_101535071 3300002027_MIS_101535071 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
445 NA K01601 scaffold_193877 3300002027_MIS_10153507 MIS_101535071 3300002027_MIS_101535071 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
446 NA K01601 scaffold_193877 3300002027_MIS_10153507 MIS_101535071 3300002027_MIS_101535071 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
447 NA K01601 scaffold_193877 3300002027_MIS_10153507 MIS_101535071 3300002027_MIS_101535071 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
448 NA K01601 scaffold_193877 3300002027_MIS_10153507 MIS_101535071 3300002027_MIS_101535071 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
324 NA K01601 scaffold_101908 3300002027_MIS_10061827 MIS_100618271 3300002027_MIS_100618271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.380 NA night NA Autotrophy RuBisCo NA
325 NA K01601 scaffold_101908 3300002027_MIS_10061827 MIS_100618271 3300002027_MIS_100618271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
326 NA K01601 scaffold_101908 3300002027_MIS_10061827 MIS_100618271 3300002027_MIS_100618271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.502 NA night NA Autotrophy RuBisCo NA
327 NA K01601 scaffold_101908 3300002027_MIS_10061827 MIS_100618271 3300002027_MIS_100618271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
328 NA K01601 scaffold_101908 3300002027_MIS_10061827 MIS_100618271 3300002027_MIS_100618271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
329 NA K01601 scaffold_101908 3300002027_MIS_10061827 MIS_100618271 3300002027_MIS_100618271 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
352 NA K01601 scaffold_273658 3300002024_MIS_1043689 MIS_10436891 3300002024_MIS_10436891 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
353 NA K01601 scaffold_273658 3300002024_MIS_1043689 MIS_10436891 3300002024_MIS_10436891 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
354 NA K01601 scaffold_273658 3300002024_MIS_1043689 MIS_10436891 3300002024_MIS_10436891 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
355 NA K01601 scaffold_273658 3300002024_MIS_1043689 MIS_10436891 3300002024_MIS_10436891 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
356 NA K01601 scaffold_273658 3300002024_MIS_1043689 MIS_10436891 3300002024_MIS_10436891 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
432 NA K01601 scaffold_273658 3300002024_MIS_1043689 MIS_10436891 3300002024_MIS_10436891 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
357 NA K01601 scaffold_278562 3300002024_MIS_1048191 MIS_10481911 3300002024_MIS_10481911 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.589 NA night NA Autotrophy RuBisCo NA
481 NA K01601 scaffold_278562 3300002024_MIS_1048191 MIS_10481911 3300002024_MIS_10481911 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 20.490 NA night NA Autotrophy RuBisCo NA
482 NA K01601 scaffold_278562 3300002024_MIS_1048191 MIS_10481911 3300002024_MIS_10481911 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
483 NA K01601 scaffold_278562 3300002024_MIS_1048191 MIS_10481911 3300002024_MIS_10481911 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 5.194 NA night NA Autotrophy RuBisCo NA
543 NA K01601 scaffold_278562 3300002024_MIS_1048191 MIS_10481911 3300002024_MIS_10481911 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 1.219 NA day NA Autotrophy RuBisCo NA
548 NA K01601 scaffold_278562 3300002024_MIS_1048191 MIS_10481911 3300002024_MIS_10481911 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 4.480 NA day NA Autotrophy RuBisCo NA
358 NA K01601 scaffold_226766 3300002024_MIS_1000948 MIS_10009481 3300002024_MIS_10009481 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
359 NA K01601 scaffold_226766 3300002024_MIS_1000948 MIS_10009481 3300002024_MIS_10009481 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
360 NA K01601 scaffold_226766 3300002024_MIS_1000948 MIS_10009481 3300002024_MIS_10009481 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
361 NA K01601 scaffold_226766 3300002024_MIS_1000948 MIS_10009481 3300002024_MIS_10009481 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
362 NA K01601 scaffold_226766 3300002024_MIS_1000948 MIS_10009481 3300002024_MIS_10009481 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
363 NA K01601 scaffold_226766 3300002024_MIS_1000948 MIS_10009481 3300002024_MIS_10009481 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
366 NA K01601 scaffold_462480 3300002024_MIS_1168904 MIS_11689041 3300002024_MIS_11689041 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
488 NA K01601 scaffold_462480 3300002024_MIS_1168904 MIS_11689041 3300002024_MIS_11689041 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
527 NA K01601 scaffold_462480 3300002024_MIS_1168904 MIS_11689041 3300002024_MIS_11689041 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
544 NA K01601 scaffold_462480 3300002024_MIS_1168904 MIS_11689041 3300002024_MIS_11689041 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
566 NA K01601 scaffold_462480 3300002024_MIS_1168904 MIS_11689041 3300002024_MIS_11689041 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
683 NA K01601 scaffold_462480 3300002024_MIS_1168904 MIS_11689041 3300002024_MIS_11689041 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
369 NA K01601 scaffold_302355 3300002027_MIS_10191762 MIS_101917623 3300002027_MIS_101917623 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
370 NA K01601 scaffold_302355 3300002027_MIS_10191762 MIS_101917623 3300002027_MIS_101917623 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
562 NA K01601 scaffold_302355 3300002027_MIS_10191762 MIS_101917623 3300002027_MIS_101917623 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
573 NA K01601 scaffold_302355 3300002027_MIS_10191762 MIS_101917623 3300002027_MIS_101917623 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
682 NA K01601 scaffold_302355 3300002027_MIS_10191762 MIS_101917623 3300002027_MIS_101917623 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
696 NA K01601 scaffold_302355 3300002027_MIS_10191762 MIS_101917623 3300002027_MIS_101917623 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
378 NA K01601 scaffold_47288 3300002027_MIS_10010142 MIS_100101421 3300002027_MIS_100101421 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
379 NA K01601 scaffold_47288 3300002027_MIS_10010142 MIS_100101421 3300002027_MIS_100101421 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
498 NA K01601 scaffold_47288 3300002027_MIS_10010142 MIS_100101421 3300002027_MIS_100101421 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
555 NA K01601 scaffold_47288 3300002027_MIS_10010142 MIS_100101421 3300002027_MIS_100101421 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
558 NA K01601 scaffold_47288 3300002027_MIS_10010142 MIS_100101421 3300002027_MIS_100101421 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
692 NA K01601 scaffold_47288 3300002027_MIS_10010142 MIS_100101421 3300002027_MIS_100101421 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
381 NA K01601 scaffold_8168 3300002026_MIS_10008169 MIS_1000816910 3300002026_MIS_1000816910 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.189 NA night NA Autotrophy RuBisCo NA
424 NA K01601 scaffold_8168 3300002026_MIS_10008169 MIS_1000816910 3300002026_MIS_1000816910 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
465 NA K01601 scaffold_8168 3300002026_MIS_10008169 MIS_1000816910 3300002026_MIS_1000816910 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
466 NA K01601 scaffold_8168 3300002026_MIS_10008169 MIS_1000816910 3300002026_MIS_1000816910 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
467 NA K01601 scaffold_8168 3300002026_MIS_10008169 MIS_1000816910 3300002026_MIS_1000816910 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
585 NA K01601 scaffold_8168 3300002026_MIS_10008169 MIS_1000816910 3300002026_MIS_1000816910 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
386 NA K01601 scaffold_494635 3300002024_MIS_1170039 MIS_11700392 3300002024_MIS_11700392 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
388 NA K01601 scaffold_494635 3300002024_MIS_1170039 MIS_11700392 3300002024_MIS_11700392 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
390 NA K01601 scaffold_494635 3300002024_MIS_1170039 MIS_11700392 3300002024_MIS_11700392 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
468 NA K01601 scaffold_494635 3300002024_MIS_1170039 MIS_11700392 3300002024_MIS_11700392 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
470 NA K01601 scaffold_494635 3300002024_MIS_1170039 MIS_11700392 3300002024_MIS_11700392 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
472 NA K01601 scaffold_494635 3300002024_MIS_1170039 MIS_11700392 3300002024_MIS_11700392 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
387 NA K01601 scaffold_271251 3300002024_MIS_1041459 MIS_10414592 3300002024_MIS_10414592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
428 NA K01601 scaffold_271251 3300002024_MIS_1041459 MIS_10414592 3300002024_MIS_10414592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
429 NA K01601 scaffold_271251 3300002024_MIS_1041459 MIS_10414592 3300002024_MIS_10414592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
430 NA K01601 scaffold_271251 3300002024_MIS_1041459 MIS_10414592 3300002024_MIS_10414592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
431 NA K01601 scaffold_271251 3300002024_MIS_1041459 MIS_10414592 3300002024_MIS_10414592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
507 NA K01601 scaffold_271251 3300002024_MIS_1041459 MIS_10414592 3300002024_MIS_10414592 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
389 NA K01601 scaffold_696983 3300002024_MIS_1176608 MIS_11766082 3300002024_MIS_11766082 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
427 NA K01601 scaffold_696983 3300002024_MIS_1176608 MIS_11766082 3300002024_MIS_11766082 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.721 NA night NA Autotrophy RuBisCo NA
505 NA K01601 scaffold_696983 3300002024_MIS_1176608 MIS_11766082 3300002024_MIS_11766082 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
506 NA K01601 scaffold_696983 3300002024_MIS_1176608 MIS_11766082 3300002024_MIS_11766082 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.217 NA day NA Autotrophy RuBisCo NA
546 NA K01601 scaffold_696983 3300002024_MIS_1176608 MIS_11766082 3300002024_MIS_11766082 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.952 NA night NA Autotrophy RuBisCo NA
549 NA K01601 scaffold_696983 3300002024_MIS_1176608 MIS_11766082 3300002024_MIS_11766082 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
392 NA K01601 scaffold_76420 3300002027_MIS_10036903 MIS_100369033 3300002027_MIS_100369033 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
475 NA K01601 scaffold_76420 3300002027_MIS_10036903 MIS_100369033 3300002027_MIS_100369033 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
476 NA K01601 scaffold_76420 3300002027_MIS_10036903 MIS_100369033 3300002027_MIS_100369033 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
516 NA K01601 scaffold_76420 3300002027_MIS_10036903 MIS_100369033 3300002027_MIS_100369033 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
541 NA K01601 scaffold_76420 3300002027_MIS_10036903 MIS_100369033 3300002027_MIS_100369033 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
680 NA K01601 scaffold_76420 3300002027_MIS_10036903 MIS_100369033 3300002027_MIS_100369033 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
393 NA K01601 scaffold_326560 3300002024_MIS_1092846 MIS_10928461 3300002024_MIS_10928461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
394 NA K01601 scaffold_326560 3300002024_MIS_1092846 MIS_10928461 3300002024_MIS_10928461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
478 NA K01601 scaffold_326560 3300002024_MIS_1092846 MIS_10928461 3300002024_MIS_10928461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
490 NA K01601 scaffold_326560 3300002024_MIS_1092846 MIS_10928461 3300002024_MIS_10928461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
565 NA K01601 scaffold_326560 3300002024_MIS_1092846 MIS_10928461 3300002024_MIS_10928461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
694 NA K01601 scaffold_326560 3300002024_MIS_1092846 MIS_10928461 3300002024_MIS_10928461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
401 NA K01601 scaffold_159956 3300002027_MIS_10119607 MIS_101196073 3300002027_MIS_101196073 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
402 NA K01601 scaffold_159956 3300002027_MIS_10119607 MIS_101196073 3300002027_MIS_101196073 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
403 NA K01601 scaffold_159956 3300002027_MIS_10119607 MIS_101196073 3300002027_MIS_101196073 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
404 NA K01601 scaffold_159956 3300002027_MIS_10119607 MIS_101196073 3300002027_MIS_101196073 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
405 NA K01601 scaffold_159956 3300002027_MIS_10119607 MIS_101196073 3300002027_MIS_101196073 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
406 NA K01601 scaffold_159956 3300002027_MIS_10119607 MIS_101196073 3300002027_MIS_101196073 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
411 NA K01601 scaffold_263290 3300002027_MIS_10188746 MIS_101887461 3300002027_MIS_101887461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
412 NA K01601 scaffold_263290 3300002027_MIS_10188746 MIS_101887461 3300002027_MIS_101887461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 1.154 NA night NA Autotrophy RuBisCo NA
449 NA K01601 scaffold_263290 3300002027_MIS_10188746 MIS_101887461 3300002027_MIS_101887461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
569 NA K01601 scaffold_263290 3300002027_MIS_10188746 MIS_101887461 3300002027_MIS_101887461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
571 NA K01601 scaffold_263290 3300002027_MIS_10188746 MIS_101887461 3300002027_MIS_101887461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
574 NA K01601 scaffold_263290 3300002027_MIS_10188746 MIS_101887461 3300002027_MIS_101887461 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
413 NA K01601 scaffold_6364 3300002026_MIS_10006365 MIS_100063655 3300002026_MIS_100063655 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
480 NA K01601 scaffold_6364 3300002026_MIS_10006365 MIS_100063655 3300002026_MIS_100063655 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
526 NA K01601 scaffold_6364 3300002026_MIS_10006365 MIS_100063655 3300002026_MIS_100063655 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
536 NA K01601 scaffold_6364 3300002026_MIS_10006365 MIS_100063655 3300002026_MIS_100063655 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
559 NA K01601 scaffold_6364 3300002026_MIS_10006365 MIS_100063655 3300002026_MIS_100063655 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
563 NA K01601 scaffold_6364 3300002026_MIS_10006365 MIS_100063655 3300002026_MIS_100063655 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
425 NA K01601 scaffold_49667 3300002026_MIS_10037470 MIS_100374701 3300002026_MIS_100374701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
473 NA K01601 scaffold_49667 3300002026_MIS_10037470 MIS_100374701 3300002026_MIS_100374701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
474 NA K01601 scaffold_49667 3300002026_MIS_10037470 MIS_100374701 3300002026_MIS_100374701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
477 NA K01601 scaffold_49667 3300002026_MIS_10037470 MIS_100374701 3300002026_MIS_100374701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
502 NA K01601 scaffold_49667 3300002026_MIS_10037470 MIS_100374701 3300002026_MIS_100374701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
557 NA K01601 scaffold_49667 3300002026_MIS_10037470 MIS_100374701 3300002026_MIS_100374701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
426 NA K01601 scaffold_76566 3300002027_MIS_10037045 MIS_100370453 3300002027_MIS_100370453 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
471 NA K01601 scaffold_76566 3300002027_MIS_10037045 MIS_100370453 3300002027_MIS_100370453 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
511 NA K01601 scaffold_76566 3300002027_MIS_10037045 MIS_100370453 3300002027_MIS_100370453 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
560 NA K01601 scaffold_76566 3300002027_MIS_10037045 MIS_100370453 3300002027_MIS_100370453 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
681 NA K01601 scaffold_76566 3300002027_MIS_10037045 MIS_100370453 3300002027_MIS_100370453 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
695 NA K01601 scaffold_76566 3300002027_MIS_10037045 MIS_100370453 3300002027_MIS_100370453 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
435 NA K01601 scaffold_98031 3300002027_MIS_10058001 MIS_100580011 3300002027_MIS_100580011 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
436 NA K01601 scaffold_98031 3300002027_MIS_10058001 MIS_100580011 3300002027_MIS_100580011 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
437 NA K01601 scaffold_98031 3300002027_MIS_10058001 MIS_100580011 3300002027_MIS_100580011 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
539 NA K01601 scaffold_98031 3300002027_MIS_10058001 MIS_100580011 3300002027_MIS_100580011 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
582 NA K01601 scaffold_98031 3300002027_MIS_10058001 MIS_100580011 3300002027_MIS_100580011 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
684 NA K01601 scaffold_98031 3300002027_MIS_10058001 MIS_100580011 3300002027_MIS_100580011 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.691 NA night NA Autotrophy RuBisCo NA
450 NA K01601 scaffold_123484 3300002027_MIS_10083235 MIS_100832352 3300002027_MIS_100832352 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.257 NA night NA Autotrophy RuBisCo NA
451 NA K01601 scaffold_123484 3300002027_MIS_10083235 MIS_100832352 3300002027_MIS_100832352 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
452 NA K01601 scaffold_123484 3300002027_MIS_10083235 MIS_100832352 3300002027_MIS_100832352 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
453 NA K01601 scaffold_123484 3300002027_MIS_10083235 MIS_100832352 3300002027_MIS_100832352 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
454 NA K01601 scaffold_123484 3300002027_MIS_10083235 MIS_100832352 3300002027_MIS_100832352 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
455 NA K01601 scaffold_123484 3300002027_MIS_10083235 MIS_100832352 3300002027_MIS_100832352 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
458 NA K01601 scaffold_217334 3300002027_MIS_10176956 MIS_101769563 3300002027_MIS_101769563 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
459 NA K01601 scaffold_217334 3300002027_MIS_10176956 MIS_101769563 3300002027_MIS_101769563 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
460 NA K01601 scaffold_217334 3300002027_MIS_10176956 MIS_101769563 3300002027_MIS_101769563 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
576 NA K01601 scaffold_217334 3300002027_MIS_10176956 MIS_101769563 3300002027_MIS_101769563 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
577 NA K01601 scaffold_217334 3300002027_MIS_10176956 MIS_101769563 3300002027_MIS_101769563 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
578 NA K01601 scaffold_217334 3300002027_MIS_10176956 MIS_101769563 3300002027_MIS_101769563 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
461 NA K01601 scaffold_69590 3300002027_MIS_10030425 MIS_100304252 3300002027_MIS_100304252 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
462 NA K01601 scaffold_69590 3300002027_MIS_10030425 MIS_100304252 3300002027_MIS_100304252 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
463 NA K01601 scaffold_69590 3300002027_MIS_10030425 MIS_100304252 3300002027_MIS_100304252 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
513 NA K01601 scaffold_69590 3300002027_MIS_10030425 MIS_100304252 3300002027_MIS_100304252 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
567 NA K01601 scaffold_69590 3300002027_MIS_10030425 MIS_100304252 3300002027_MIS_100304252 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
581 NA K01601 scaffold_69590 3300002027_MIS_10030425 MIS_100304252 3300002027_MIS_100304252 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
484 NA K01601 scaffold_330724 3300002024_MIS_1096782 MIS_10967822 3300002024_MIS_10967822 NA NA rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
521 NA K01601 scaffold_330724 3300002024_MIS_1096782 MIS_10967822 3300002024_MIS_10967822 NA NA rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
522 NA K01601 scaffold_330724 3300002024_MIS_1096782 MIS_10967822 3300002024_MIS_10967822 NA NA rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
523 NA K01601 scaffold_330724 3300002024_MIS_1096782 MIS_10967822 3300002024_MIS_10967822 NA NA rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
525 NA K01601 scaffold_330724 3300002024_MIS_1096782 MIS_10967822 3300002024_MIS_10967822 NA NA rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
689 NA K01601 scaffold_330724 3300002024_MIS_1096782 MIS_10967822 3300002024_MIS_10967822 NA NA rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
489 NA K01601 scaffold_93530 3300002027_MIS_10053558 MIS_100535585 3300002027_MIS_100535585 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
491 NA K01601 scaffold_93530 3300002027_MIS_10053558 MIS_100535585 3300002027_MIS_100535585 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
501 NA K01601 scaffold_93530 3300002027_MIS_10053558 MIS_100535585 3300002027_MIS_100535585 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
503 NA K01601 scaffold_93530 3300002027_MIS_10053558 MIS_100535585 3300002027_MIS_100535585 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
538 NA K01601 scaffold_93530 3300002027_MIS_10053558 MIS_100535585 3300002027_MIS_100535585 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
568 NA K01601 scaffold_93530 3300002027_MIS_10053558 MIS_100535585 3300002027_MIS_100535585 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
492 NA K01601 scaffold_461464 3300002024_MIS_1168867 MIS_11688671 3300002024_MIS_11688671 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
508 NA K01601 scaffold_461464 3300002024_MIS_1168867 MIS_11688671 3300002024_MIS_11688671 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
533 NA K01601 scaffold_461464 3300002024_MIS_1168867 MIS_11688671 3300002024_MIS_11688671 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
553 NA K01601 scaffold_461464 3300002024_MIS_1168867 MIS_11688671 3300002024_MIS_11688671 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.301 NA night NA Autotrophy RuBisCo NA
554 NA K01601 scaffold_461464 3300002024_MIS_1168867 MIS_11688671 3300002024_MIS_11688671 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
688 NA K01601 scaffold_461464 3300002024_MIS_1168867 MIS_11688671 3300002024_MIS_11688671 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
500 NA K01601 scaffold_611987 3300002027_MIS_10199808 MIS_101998085 3300002027_MIS_101998085 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism NA NA NA NA NA Autotrophy RuBisCo NA
509 NA K01601 scaffold_595269 3300002024_MIS_1173722 MIS_11737221 3300002024_MIS_11737221 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
510 NA K01601 scaffold_595269 3300002024_MIS_1173722 MIS_11737221 3300002024_MIS_11737221 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 5.895 NA day NA Autotrophy RuBisCo NA
524 NA K01601 scaffold_595269 3300002024_MIS_1173722 MIS_11737221 3300002024_MIS_11737221 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 11.230 NA night NA Autotrophy RuBisCo NA
534 NA K01601 scaffold_595269 3300002024_MIS_1173722 MIS_11737221 3300002024_MIS_11737221 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 1.649 NA night NA Autotrophy RuBisCo NA
535 NA K01601 scaffold_595269 3300002024_MIS_1173722 MIS_11737221 3300002024_MIS_11737221 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.910 NA day NA Autotrophy RuBisCo NA
685 NA K01601 scaffold_595269 3300002024_MIS_1173722 MIS_11737221 3300002024_MIS_11737221 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
512 NA K01601 scaffold_611987 3300002027_MIS_10199808 MIS_101998084 3300002027_MIS_101998084 Ribulose bisphosphate carboxylase large chain, N-terminal domain pfam02788 rbcL Carbon metabolism NA NA NA NA NA Autotrophy RuBisCo NA
529 NA K01601 scaffold_53438 3300002026_MIS_10037904 MIS_100379048 3300002026_MIS_100379048 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism NA NA NA NA NA Autotrophy RuBisCo NA
531 NA K01601 scaffold_83491 3300002027_MIS_10043737 MIS_100437376 3300002027_MIS_100437376 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 1.132 NA day NA Autotrophy RuBisCo NA
540 NA K01601 scaffold_83491 3300002027_MIS_10043737 MIS_100437376 3300002027_MIS_100437376 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 9.311 NA night NA Autotrophy RuBisCo NA
545 NA K01601 scaffold_83491 3300002027_MIS_10043737 MIS_100437376 3300002027_MIS_100437376 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 9.934 NA night NA Autotrophy RuBisCo NA
584 NA K01601 scaffold_83491 3300002027_MIS_10043737 MIS_100437376 3300002027_MIS_100437376 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 9.164 NA day NA Autotrophy RuBisCo NA
687 NA K01601 scaffold_83491 3300002027_MIS_10043737 MIS_100437376 3300002027_MIS_100437376 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 3.083 NA day NA Autotrophy RuBisCo NA
691 NA K01601 scaffold_83491 3300002027_MIS_10043737 MIS_100437376 3300002027_MIS_100437376 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.684 NA night NA Autotrophy RuBisCo NA
542 NA K01601 scaffold_80044 3300002027_MIS_10040399 MIS_100403993 3300002027_MIS_100403993 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 1.757 NA night NA Autotrophy RuBisCo NA
556 NA K01601 scaffold_80044 3300002027_MIS_10040399 MIS_100403993 3300002027_MIS_100403993 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
572 NA K01601 scaffold_80044 3300002027_MIS_10040399 MIS_100403993 3300002027_MIS_100403993 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.706 NA day NA Autotrophy RuBisCo NA
583 NA K01601 scaffold_80044 3300002027_MIS_10040399 MIS_100403993 3300002027_MIS_100403993 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 7.176 NA night NA Autotrophy RuBisCo NA
686 NA K01601 scaffold_80044 3300002027_MIS_10040399 MIS_100403993 3300002027_MIS_100403993 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.582 NA day NA Autotrophy RuBisCo NA
690 NA K01601 scaffold_80044 3300002027_MIS_10040399 MIS_100403993 3300002027_MIS_100403993 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.741 NA night NA Autotrophy RuBisCo NA
547 NA K01601 scaffold_264506 3300002024_MIS_1035270 MIS_10352701 3300002024_MIS_10352701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy RuBisCo NA
552 NA K01601 scaffold_264506 3300002024_MIS_1035270 MIS_10352701 3300002024_MIS_10352701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy RuBisCo NA
564 NA K01601 scaffold_264506 3300002024_MIS_1035270 MIS_10352701 3300002024_MIS_10352701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy RuBisCo NA
575 NA K01601 scaffold_264506 3300002024_MIS_1035270 MIS_10352701 3300002024_MIS_10352701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy RuBisCo NA
579 NA K01601 scaffold_264506 3300002024_MIS_1035270 MIS_10352701 3300002024_MIS_10352701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy RuBisCo NA
580 NA K01601 scaffold_264506 3300002024_MIS_1035270 MIS_10352701 3300002024_MIS_10352701 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy RuBisCo NA
550 NA K01601 scaffold_53438 3300002026_MIS_10037904 MIS_100379047 3300002026_MIS_100379047 Ribulose 1,5-bisphosphate carboxylase, large subunit COG1850 rbcL Carbon metabolism NA NA NA NA NA Autotrophy RuBisCo NA
586 NA K08691 scaffold_400648 3300002024_MIS_1163492 MIS_11634921 3300002024_MIS_11634921 HpcH/HpaI aldolase/citrate lyase family pfam03328 mcl Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy 3HP NA
587 NA K08691 scaffold_400648 3300002024_MIS_1163492 MIS_11634921 3300002024_MIS_11634921 HpcH/HpaI aldolase/citrate lyase family pfam03328 mcl Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy 3HP NA
588 NA K08691 scaffold_400648 3300002024_MIS_1163492 MIS_11634921 3300002024_MIS_11634921 HpcH/HpaI aldolase/citrate lyase family pfam03328 mcl Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy 3HP NA
589 NA K08691 scaffold_400648 3300002024_MIS_1163492 MIS_11634921 3300002024_MIS_11634921 HpcH/HpaI aldolase/citrate lyase family pfam03328 mcl Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy 3HP NA
590 NA K08691 scaffold_400648 3300002024_MIS_1163492 MIS_11634921 3300002024_MIS_11634921 HpcH/HpaI aldolase/citrate lyase family pfam03328 mcl Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy 3HP NA
693 NA K08691 scaffold_400648 3300002024_MIS_1163492 MIS_11634921 3300002024_MIS_11634921 HpcH/HpaI aldolase/citrate lyase family pfam03328 mcl Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy 3HP NA
591 NA K14138 scaffold_161136 3300002027_MIS_10120787 MIS_101207871 3300002027_MIS_101207871 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
594 NA K14138 scaffold_161136 3300002027_MIS_10120787 MIS_101207871 3300002027_MIS_101207871 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
636 NA K14138 scaffold_161136 3300002027_MIS_10120787 MIS_101207871 3300002027_MIS_101207871 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
639 NA K14138 scaffold_161136 3300002027_MIS_10120787 MIS_101207871 3300002027_MIS_101207871 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
640 NA K14138 scaffold_161136 3300002027_MIS_10120787 MIS_101207871 3300002027_MIS_101207871 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
641 NA K14138 scaffold_161136 3300002027_MIS_10120787 MIS_101207871 3300002027_MIS_101207871 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.481 NA night NA Autotrophy WLP NA
592 NA K14138 scaffold_137721 3300002027_MIS_10097410 MIS_100974101 3300002027_MIS_100974101 NA NA acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
593 NA K14138 scaffold_137721 3300002027_MIS_10097410 MIS_100974101 3300002027_MIS_100974101 NA NA acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
612 NA K14138 scaffold_137721 3300002027_MIS_10097410 MIS_100974101 3300002027_MIS_100974101 NA NA acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
614 NA K14138 scaffold_137721 3300002027_MIS_10097410 MIS_100974101 3300002027_MIS_100974101 NA NA acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
616 NA K14138 scaffold_137721 3300002027_MIS_10097410 MIS_100974101 3300002027_MIS_100974101 NA NA acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
635 NA K14138 scaffold_137721 3300002027_MIS_10097410 MIS_100974101 3300002027_MIS_100974101 NA NA acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
595 NA K14138 scaffold_102549 3300002027_MIS_10062459 MIS_100624591 3300002027_MIS_100624591 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.188 NA night NA Autotrophy WLP NA
599 NA K14138 scaffold_102549 3300002027_MIS_10062459 MIS_100624591 3300002027_MIS_100624591 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
620 NA K14138 scaffold_102549 3300002027_MIS_10062459 MIS_100624591 3300002027_MIS_100624591 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
623 NA K14138 scaffold_102549 3300002027_MIS_10062459 MIS_100624591 3300002027_MIS_100624591 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
625 NA K14138 scaffold_102549 3300002027_MIS_10062459 MIS_100624591 3300002027_MIS_100624591 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
627 NA K14138 scaffold_102549 3300002027_MIS_10062459 MIS_100624591 3300002027_MIS_100624591 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
596 NA K14138 scaffold_121641 3300002027_MIS_10081400 MIS_100814001 3300002027_MIS_100814001 NA NA acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
603 NA K14138 scaffold_121641 3300002027_MIS_10081400 MIS_100814001 3300002027_MIS_100814001 NA NA acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
604 NA K14138 scaffold_121641 3300002027_MIS_10081400 MIS_100814001 3300002027_MIS_100814001 NA NA acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
609 NA K14138 scaffold_121641 3300002027_MIS_10081400 MIS_100814001 3300002027_MIS_100814001 NA NA acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
610 NA K14138 scaffold_121641 3300002027_MIS_10081400 MIS_100814001 3300002027_MIS_100814001 NA NA acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
628 NA K14138 scaffold_121641 3300002027_MIS_10081400 MIS_100814001 3300002027_MIS_100814001 NA NA acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
597 NA K14138 scaffold_178801 3300002027_MIS_10138437 MIS_101384372 3300002027_MIS_101384372 NA NA acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
600 NA K14138 scaffold_178801 3300002027_MIS_10138437 MIS_101384372 3300002027_MIS_101384372 NA NA acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
645 NA K14138 scaffold_178801 3300002027_MIS_10138437 MIS_101384372 3300002027_MIS_101384372 NA NA acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
646 NA K14138 scaffold_178801 3300002027_MIS_10138437 MIS_101384372 3300002027_MIS_101384372 NA NA acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
647 NA K14138 scaffold_178801 3300002027_MIS_10138437 MIS_101384372 3300002027_MIS_101384372 NA NA acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
650 NA K14138 scaffold_178801 3300002027_MIS_10138437 MIS_101384372 3300002027_MIS_101384372 NA NA acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
598 NA K14138 scaffold_78611 3300002027_MIS_10039008 MIS_100390082 3300002027_MIS_100390082 Domain of unknown function (DUF3368) pfam11848 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
601 NA K14138 scaffold_78611 3300002027_MIS_10039008 MIS_100390082 3300002027_MIS_100390082 Domain of unknown function (DUF3368) pfam11848 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
615 NA K14138 scaffold_78611 3300002027_MIS_10039008 MIS_100390082 3300002027_MIS_100390082 Domain of unknown function (DUF3368) pfam11848 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
638 NA K14138 scaffold_78611 3300002027_MIS_10039008 MIS_100390082 3300002027_MIS_100390082 Domain of unknown function (DUF3368) pfam11848 acsB Carbon metabolism cDNA 2012-3D 0.316 NA day NA Autotrophy WLP NA
649 NA K14138 scaffold_78611 3300002027_MIS_10039008 MIS_100390082 3300002027_MIS_100390082 Domain of unknown function (DUF3368) pfam11848 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
657 NA K14138 scaffold_78611 3300002027_MIS_10039008 MIS_100390082 3300002027_MIS_100390082 Domain of unknown function (DUF3368) pfam11848 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
602 NA K14138 scaffold_218468 3300002027_MIS_10178088 MIS_101780881 3300002027_MIS_101780881 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
608 NA K14138 scaffold_218468 3300002027_MIS_10178088 MIS_101780881 3300002027_MIS_101780881 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
651 NA K14138 scaffold_218468 3300002027_MIS_10178088 MIS_101780881 3300002027_MIS_101780881 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
666 NA K14138 scaffold_218468 3300002027_MIS_10178088 MIS_101780881 3300002027_MIS_101780881 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
667 NA K14138 scaffold_218468 3300002027_MIS_10178088 MIS_101780881 3300002027_MIS_101780881 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
668 NA K14138 scaffold_218468 3300002027_MIS_10178088 MIS_101780881 3300002027_MIS_101780881 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
605 NA K14138 scaffold_376143 3300002024_MIS_1139927 MIS_11399271 3300002024_MIS_11399271 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
642 NA K14138 scaffold_376143 3300002024_MIS_1139927 MIS_11399271 3300002024_MIS_11399271 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
643 NA K14138 scaffold_376143 3300002024_MIS_1139927 MIS_11399271 3300002024_MIS_11399271 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
662 NA K14138 scaffold_376143 3300002024_MIS_1139927 MIS_11399271 3300002024_MIS_11399271 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
664 NA K14138 scaffold_376143 3300002024_MIS_1139927 MIS_11399271 3300002024_MIS_11399271 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
665 NA K14138 scaffold_376143 3300002024_MIS_1139927 MIS_11399271 3300002024_MIS_11399271 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
606 NA K14138 scaffold_373245 3300002024_MIS_1137162 MIS_11371621 3300002024_MIS_11371621 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
607 NA K14138 scaffold_373245 3300002024_MIS_1137162 MIS_11371621 3300002024_MIS_11371621 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
648 NA K14138 scaffold_373245 3300002024_MIS_1137162 MIS_11371621 3300002024_MIS_11371621 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
661 NA K14138 scaffold_373245 3300002024_MIS_1137162 MIS_11371621 3300002024_MIS_11371621 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
669 NA K14138 scaffold_373245 3300002024_MIS_1137162 MIS_11371621 3300002024_MIS_11371621 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
672 NA K14138 scaffold_373245 3300002024_MIS_1137162 MIS_11371621 3300002024_MIS_11371621 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
611 NA K14138 scaffold_150307 3300002027_MIS_10109974 MIS_101099741 3300002027_MIS_101099741 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
617 NA K14138 scaffold_150307 3300002027_MIS_10109974 MIS_101099741 3300002027_MIS_101099741 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
618 NA K14138 scaffold_150307 3300002027_MIS_10109974 MIS_101099741 3300002027_MIS_101099741 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
631 NA K14138 scaffold_150307 3300002027_MIS_10109974 MIS_101099741 3300002027_MIS_101099741 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
655 NA K14138 scaffold_150307 3300002027_MIS_10109974 MIS_101099741 3300002027_MIS_101099741 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
656 NA K14138 scaffold_150307 3300002027_MIS_10109974 MIS_101099741 3300002027_MIS_101099741 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
613 NA K14138 scaffold_51981 3300002027_MIS_10014235 MIS_100142354 3300002027_MIS_100142354 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
624 NA K14138 scaffold_51981 3300002027_MIS_10014235 MIS_100142354 3300002027_MIS_100142354 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
626 NA K14138 scaffold_51981 3300002027_MIS_10014235 MIS_100142354 3300002027_MIS_100142354 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
658 NA K14138 scaffold_51981 3300002027_MIS_10014235 MIS_100142354 3300002027_MIS_100142354 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
659 NA K14138 scaffold_51981 3300002027_MIS_10014235 MIS_100142354 3300002027_MIS_100142354 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
660 NA K14138 scaffold_51981 3300002027_MIS_10014235 MIS_100142354 3300002027_MIS_100142354 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.159 NA night NA Autotrophy WLP NA
619 NA K14138 scaffold_310501 3300002024_MIS_1077783 MIS_10777831 3300002024_MIS_10777831 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
630 NA K14138 scaffold_310501 3300002024_MIS_1077783 MIS_10777831 3300002024_MIS_10777831 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
632 NA K14138 scaffold_310501 3300002024_MIS_1077783 MIS_10777831 3300002024_MIS_10777831 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
633 NA K14138 scaffold_310501 3300002024_MIS_1077783 MIS_10777831 3300002024_MIS_10777831 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
652 NA K14138 scaffold_310501 3300002024_MIS_1077783 MIS_10777831 3300002024_MIS_10777831 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
653 NA K14138 scaffold_310501 3300002024_MIS_1077783 MIS_10777831 3300002024_MIS_10777831 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
621 NA K14138 scaffold_81123 3300002027_MIS_10041442 MIS_100414422 3300002027_MIS_100414422 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy WLP NA
622 NA K14138 scaffold_81123 3300002027_MIS_10041442 MIS_100414422 3300002027_MIS_100414422 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy WLP NA
644 NA K14138 scaffold_81123 3300002027_MIS_10041442 MIS_100414422 3300002027_MIS_100414422 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy WLP NA
663 NA K14138 scaffold_81123 3300002027_MIS_10041442 MIS_100414422 3300002027_MIS_100414422 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy WLP NA
670 NA K14138 scaffold_81123 3300002027_MIS_10041442 MIS_100414422 3300002027_MIS_100414422 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy WLP NA
671 NA K14138 scaffold_81123 3300002027_MIS_10041442 MIS_100414422 3300002027_MIS_100414422 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy WLP NA
629 NA K14138 scaffold_69874 3300002027_MIS_10030689 MIS_100306892 3300002027_MIS_100306892 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism NA NA NA NA NA Autotrophy WLP NA
634 NA K14138 scaffold_510462 3300002024_MIS_1170680 MIS_11706802 3300002024_MIS_11706802 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism NA NA NA NA NA Autotrophy WLP NA
637 NA K14138 scaffold_510462 3300002024_MIS_1170680 MIS_11706801 3300002024_MIS_11706801 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism NA NA NA NA NA Autotrophy WLP NA
654 NA K14138 scaffold_69874 3300002027_MIS_10030689 MIS_100306891 3300002027_MIS_100306891 CO dehydrogenase/acetyl-CoA synthase beta subunit COG1614 acsB Carbon metabolism NA NA NA NA NA Autotrophy WLP NA
673 NA K15231 scaffold_88462 3300002027_MIS_10048588 MIS_100485881 3300002027_MIS_100485881 NA NA aclB Carbon metabolism cDNA 2012-4N 0.000 NA night NA Autotrophy rTCA NA
674 NA K15231 scaffold_88462 3300002027_MIS_10048588 MIS_100485881 3300002027_MIS_100485881 NA NA aclB Carbon metabolism cDNA 2012-1D 0.000 NA day NA Autotrophy rTCA NA
675 NA K15231 scaffold_88462 3300002027_MIS_10048588 MIS_100485881 3300002027_MIS_100485881 NA NA aclB Carbon metabolism cDNA 2012-2D 0.000 NA day NA Autotrophy rTCA NA
676 NA K15231 scaffold_88462 3300002027_MIS_10048588 MIS_100485881 3300002027_MIS_100485881 NA NA aclB Carbon metabolism cDNA 2012-3D 0.000 NA day NA Autotrophy rTCA NA
677 NA K15231 scaffold_88462 3300002027_MIS_10048588 MIS_100485881 3300002027_MIS_100485881 NA NA aclB Carbon metabolism cDNA 2012-6N 0.000 NA night NA Autotrophy rTCA NA
678 NA K15231 scaffold_88462 3300002027_MIS_10048588 MIS_100485881 3300002027_MIS_100485881 NA NA aclB Carbon metabolism cDNA 2012-5N 0.000 NA night NA Autotrophy rTCA NA

What do these column names mean?

  • KOCategory: Now you can look up the gene’s KEGG Orthology.
  • IMGScaffold: Similar to the accession column, only this tells you which IMG Genome ID to look for, and the name of the contig.
  • gene_id: Here is the gene name you want to search with on IMG.
  • Description: What kind of KO is this?
  • Category: is there a COG or pfam associated with this gene as well?
  • Short name: similar to gene_name
  • System: When I made Figure 1, this is the variable by which I faceted the x-axis.
  • Pathway: This is the autotrophic metabolism to which this gene belongs. I used this variable to facet the graph.
  • Label: in this dataframe, this is used in the x-axis label, and is a composite of the MAG taxonomy and the bin name.

Figure 6, Relative abundance of transcripts for key genes in active autotrophic pathways normalized by total number of sequences in each sample.

Supplemental Figure 1.

What is relative abundance of taxa across time (in the metagenome), and what is their contribution to the metatranscriptomic samples? I lumped together MAGs of the same taxonomy. For each MAG in each sample, I used the average coverage of contigs assigned to that MAG.

Supplemental Figure 2.

Though the Phormidium MAG is very important to the MIS metagenome and metatranscriptomic data, it’s actually not that well binned. There are multiple copies of SCGs (single copy genes) on contigs that are taxonomically distinct on a genus level, suggesting strain heterogeneity in the MAG. I extracted all the contigs from the Phormidium MAG that had a SCG, then looked at the length of that contig, the length of the SCG, the position of the SCG on the contig, and the taxonomy of the contig

In this graph, each bar represents one contig, and the colored portion represents the location and length of a SCG. The contigs are ordered by length, with the longest contig with a SCG on the left. The color relates to the taxonomy assigned to that contig. Thankfully, all the contigs were cyanobacterial in taxonomy.

Supplemental Figure 3.

Putative bacillariophyte diatoms are present in these data, and we can see potential chloroplasts by the presence of photosynthetic genes on these contigs. In this graph, I’ve evaluated the average coverages of putative chloroplasts in the metagenome (Average_gDNA) and metatranscriptomic data (Average_cDNA), and grouped them by day/night. The y-axis is log-transformed average coverage. Putative chloroplasts are plotted on the x-axis. Labels comprise the MAG bin to which it belongs, and the length of the contig.

Note that Bin_3_3 has three putative chloroplast contigs, two of which are pretty good sized (30k and 40k). In contrast, Bin_3_1 has only two putative chloroplast contigs (and short ones at that) attributed to it. However, one of its short (5856bp) chloroplast contigs has way more coverage in the metatranscriptomic data than expected from the metagenome, and more than those belonging to Bin_3_3.

Supplemental Figure 4.

This is an expanded version of Figure 2, plotting sample-normalized TPM.

Supplemental Figure 5.

When figuring out whether Phormidium anoxygenic photosynthesis (indicated by sqr) is prevalent, we examined the expression of other photosystem I genes such as psaL and psaX. The activity levels of these two photosystem I genes are similar to the expression of type I sqr in Phormidium.

Supplemental Figure 6.

What oxidases is Phormidium expressing?

Supplemental Figure 7.

Building from Figure 5, what are the expression patterns of reductive dsrA and dsrD in day and night? Do highly-expressed genes belong to any high-quality MAGs?

In this graph, dsrA and dsrD from the same contig are plotted adjacent to each other. About half the contigs were binned. Three contigs with dsrAD were not binned, so I relied upon the taxonomy of the contig. The first panel of the graph is the sample-normalized TPM, and contigs have this metric calculated for its dsrAD genes.

The second panel is bin- and sample-normalized TPM of contigs with dsrAD that belonged to MAGs. The third panel plots the % complete of the MAGs in the metagenome. The fourth and fifth panels show the average coverages in the metagenome and metatranscriptomic data for those MAGs. Note that the contigs that were not able to be binned, are not shown in these panels.

Supplemental Figure 8.

What other kinds of sulfur cycling genes are observed in the metagenome and metatranscriptomic data? Here I have plotted the sample-normalized TPM of fccA, fccB, and soxA genes in daytime and nighttime. Genes are labeled on the x-axis. If the genes were on contigs that were binned, the MAG bins are included in the x-axis label.

Supplemental Table 2.

These are the summary statistics of the 144 MAGs extracted from the metagenome.

  • total length: length of the MAG in base pairs (bp)
  • Mean gDNA coverage: Mapping metagenomic reads to the assembled contigs generated average observed coverage for each contig per sample. For each bin, I averaged the observed coverages of its contigs.
  • Mean cDNA coverage: Mapping the transcripts this time.

Then the following columns are key metabolisms we evaluated the MAGs for indicator genes. An “X” in the field means that the indicator gene in the parentheses was found in the MAG.

Summary statistics of MAGs in Middle Island Sinkhole metagenome
MAG total_length percent_completion percent_redundancy Taxonomy Mean gDNA coverage Mean cDNA coverage Autotrophy (Rubisco) Autotrophy WL Pathway (acsB) Photosystem I (psaA) Photosystem II (psbA) AP reaction cores (pufL/M) Bacteriochlorophyll (bchX/Y/Z) Denitrification (nirK) Nitrogen fixation (nifH+D/K) H2 oxidation (hupL/hydB) Methane oxidation (mmoC) Oxygen respiration (cbo3, cbb3, cox1, cb1) S reduction/oxidation (dsrA/rdsrA) Sulfide redox (fcc) Sulfite oxidation (aprA) Thiosulfate oxidation (soxA)
Bin_1 11033395 70.4 56.34 Cyanobacteria;Phormidium 203.005 181.212 X NA X X NA NA NA X NA NA X NA NA X NA
Bin_10_2-contigs 8793166 32.5 3.61 Eukaryota 0.016 0.006 NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_100 1400511 0.0 0.00 Bacteroidetes;Paludibacter 4.634 0.089 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_101 3961593 88.7 4.22 Deltaproteobacteria;Desulfobacteraceae 0.411 0.026 NA X NA NA NA NA NA NA X NA X X NA X NA
bin_102 3062052 71.8 1.41 Deltaproteobacteria;Desulfobulbaceae 0.570 0.030 NA X NA NA NA NA NA X X NA X X NA X NA
bin_103 1266519 0.0 0.00 Bacteria 0.569 0.023 NA NA NA NA NA NA NA NA X NA X NA NA NA NA
bin_105 4024241 70.4 1.41 Bacteria 4.096 0.053 NA NA NA NA NA NA NA X NA NA X NA NA X NA
bin_106 2418005 0.0 0.00 Betaproteobacteria;Rhodoferax 3.775 0.077 NA NA NA NA NA NA NA NA NA NA NA NA NA NA X
bin_111 637507 0.0 0.00 Betaproteobacteria 1.845 0.036 NA NA NA NA NA NA NA NA NA NA NA NA X X NA
bin_112 2800085 64.8 4.22 Bacteroidetes;Paludibacter 3.580 0.105 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_113 823305 0.0 0.00 Bacteroidetes 0.256 0.030 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_114 1033036 0.0 0.00 Betaproteobacteria;Rhodoferax 0.725 0.021 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_117 1688616 63.4 0.00 Bacteroidetes 1.426 0.058 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_118 3917186 98.6 1.41 Bacteria 0.771 3.622 NA NA NA NA NA NA NA NA NA NA X X NA X NA
bin_120 2823555 85.9 2.82 Chloroflexi 1.015 2.731 NA NA NA NA X X NA X X NA X NA NA NA NA
bin_122 3455847 74.6 2.82 Betaproteobacteria;Candidatus Accumulibacter 0.787 0.014 X NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_123 2116432 38.0 2.82 Chloroflexi 1.221 0.026 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_124 1128359 36.6 0.00 Bacteroidetes 0.082 0.025 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_127 3724154 70.4 2.82 Betaproteobacteria 1.173 0.046 X NA NA NA NA NA X NA X NA X X X X NA
bin_131 1613140 97.2 0.00 Betaproteobacteria;Collimonas 0.028 0.014 NA NA NA NA NA NA NA NA NA NA X X NA X NA
bin_132 4302557 84.5 1.41 Bacteroidetes;Paludibacter 1.567 2.407 NA NA NA NA NA NA NA X NA NA X NA NA NA NA
bin_134 1818317 23.9 2.82 Spirochaetes 0.293 0.025 NA NA NA NA NA NA NA NA NA NA NA X NA NA NA
bin_141 3352447 49.3 1.41 Chloroflexi;Anaerolinea 0.503 0.022 NA NA NA NA NA NA NA NA NA NA X X NA X NA
bin_143 4277160 95.8 11.27 Cyanobacteria;Pseudanabaena 0.461 0.070 X NA X X NA NA NA X NA NA X NA NA X NA
bin_144 1077631 38.0 4.22 Betaproteobacteria;Sideroxydans 0.432 0.614 NA NA NA NA NA NA NA NA X NA NA X NA X NA
bin_145_29 998016 0.0 0.00 Deltaproteobacteria 0.129 0.020 NA NA NA NA NA NA NA NA NA NA NA X NA NA NA
bin_146 2304693 0.0 0.00 Bacteria 0.137 0.017 NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_149 1412910 56.3 4.22 Gammaproteobacteria;Methylovulum 0.053 4.961 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_151 2184168 76.1 1.41 Betaproteobacteria 1.821 0.047 X NA NA NA NA NA NA NA X NA X X X X NA
bin_153 2962889 71.8 8.45 Bacteroidetes 0.167 39.290 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_154 820620 22.5 1.41 Chloroflexi;Anaerolinea 0.725 0.053 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_155 548848 50.7 1.41 Verrucomicrobia 0.511 0.026 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_156 3085822 63.4 0.00 Bacteria 1.196 0.130 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_157 163623 0.0 0.00 Bacteria 0.045 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_158 2018828 77.5 1.41 Gammaproteobacteria;Thiotrichaceae 0.240 13.054 X NA NA NA NA NA NA NA X NA X NA X NA NA
bin_159 900344 0.0 0.00 Fibrobacteres 0.599 0.026 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_16 1665686 0.0 0.00 Spirochaetes 0.814 0.032 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_160 1482139 43.7 0.00 Bacteroidetes 0.757 0.069 NA NA NA NA NA NA X NA NA NA X NA NA NA NA
bin_162 1282009 21.1 4.22 Spirochaetes 0.865 0.036 NA NA NA NA NA NA NA NA NA NA NA X NA X NA
bin_164 948971 0.0 0.00 Gammaproteobacteria 2.043 0.296 NA NA NA NA NA NA NA NA NA NA NA NA NA NA X
bin_165 450480 0.0 0.00 Verrucomicrobia 0.921 0.026 NA NA NA NA NA NA NA NA X NA NA NA NA X NA
bin_167 569153 0.0 0.00 Betaproteobacteria;Rhodoferax 1.387 0.225 NA NA NA NA NA NA NA NA NA NA NA NA X X NA
bin_168 157396 0.0 0.00 Bacteria 0.036 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_169 2672817 54.9 0.00 Bacteroidetes;Draconibacterium 0.488 0.157 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_170 2433296 62.0 5.63 Deltaproteobacteria;Desulfobulbaceae 0.702 0.030 NA NA NA NA NA NA NA X X NA X X NA X NA
bin_172 1252337 0.0 0.00 Spirochaetes 0.858 0.030 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_176 945589 0.0 0.00 Bacteroidetes;Draconibacterium 0.663 0.093 NA NA NA NA NA NA NA NA NA NA X X NA X NA
bin_178 371388 0.0 0.00 Bacteroidetes 0.246 0.035 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_179 919484 0.0 0.00 Chloroflexi;Anaerolinea 0.786 0.043 X NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_180 527123 0.0 0.00 Cyanobacteria;Oscillatoriales 0.729 0.046 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_182 2968070 88.7 1.41 Bacteria 0.061 3.837 NA NA NA NA NA NA NA X X NA X NA NA X NA
bin_187 4444501 62.0 1.41 Chloroflexi 0.430 35.357 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_188 687171 0.0 0.00 Gammaproteobacteria;Thioploca 2.995 0.099 X NA NA NA NA NA NA NA NA NA NA NA X NA NA
bin_190 406092 0.0 0.00 Chloroflexi;Anaerolinea 0.533 0.036 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_193 2240036 67.6 1.41 Chlorobi 0.106 0.889 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_194 329682 29.6 1.41 Firmicutes - Clostridia 0.261 NA NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_197 1178942 0.0 0.00 Bacteroidetes;Draconibacterium 0.327 0.085 NA NA NA NA NA NA NA NA NA NA NA X NA NA NA
bin_199 3969302 90.1 7.04 Spirochaetes 1.314 0.726 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_2 13858755 21.7 25.30 Eukaryota 0.027 0.372 NA NA NA NA NA NA NA NA NA NA NA X NA X NA
bin_200 218076 28.2 0.00 Betaproteobacteria 1.728 0.052 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_201 437961 0.0 0.00 Spirochaetes 0.405 0.034 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_202 3626904 32.4 2.82 Bacteroidetes 0.648 0.122 NA NA NA NA NA NA X NA NA NA X NA NA NA NA
bin_204 1256801 45.1 1.41 Deltaproteobacteria;Desulfobacteraceae 6.418 0.205 NA X NA NA NA NA NA NA X NA X X NA X NA
bin_207 2366644 93.0 0.00 Bacteroidetes 0.310 3.833 NA NA NA NA NA NA NA X NA NA X NA NA X NA
bin_208 1036760 71.8 0.00 Alphaproteobacteria;Rickettsia 0.035 NA NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_209 3253134 91.5 2.82 Deltaproteobacteria;Halobacteriovorax 0.090 0.773 NA NA NA NA NA NA NA NA X NA X NA NA NA NA
bin_212 2393843 83.1 5.63 Bacteria 1.181 0.765 NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_219 976721 0.0 0.00 Spirochaetes 0.240 0.019 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_220 1483107 19.7 0.00 Bacteria 0.676 0.025 NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_224 1116623 35.2 0.00 Bacteroidetes 0.380 0.034 NA NA NA NA NA NA NA NA NA NA NA X NA NA NA
bin_227 2930134 76.1 0.00 Bacteroidetes;Flavobacterium 0.944 0.037 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_228 6581157 94.4 4.22 Bacteroidetes 0.138 0.014 NA NA NA NA NA NA X X X NA X X NA X NA
bin_229 4595121 87.3 1.41 Betaproteobacteria;Rhodoferax 0.481 0.257 NA NA NA NA NA NA NA NA NA NA X NA X X NA
bin_23 347815 0.0 0.00 Bacteroidetes 0.913 0.030 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_232 476289 0.0 0.00 Chloroflexi;Anaerolinea 0.157 NA NA NA NA NA NA NA NA NA X NA X NA NA X NA
bin_233 797513 53.5 0.00 Epsilonproteobacteria;Sulfurospirillum 2.241 0.144 NA NA NA NA NA NA NA NA X NA NA X NA NA NA
bin_234 750004 0.0 0.00 Gammaproteobacteria;Thioploca 0.130 NA X NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_235_243 5709010 91.5 42.25 Cyanobacteria;Planktothrix 28.572 1.538 X NA X X NA NA NA X NA NA X NA NA X NA
bin_239 2545173 69.0 1.41 Bacteroidetes 0.291 0.028 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_242 788631 0.0 0.00 Bacteroidetes;Flavobacterium 0.310 0.025 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_246 2662737 69.0 2.82 Betaproteobacteria;Rhodoferax 1.457 0.044 X NA NA NA NA NA NA NA X NA X X NA NA NA
bin_247 902565 0.0 0.00 Gammaproteobacteria;Thioploca 2.753 0.073 X NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_25 317211 31.0 0.00 Epsilonproteobacteria 0.463 0.146 NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_250 1008733 53.5 1.41 Bacteria;Vampirococcus 0.154 0.019 NA NA NA NA NA NA NA NA NA NA NA X NA NA NA
bin_251 2806768 43.7 1.41 Spirochaetes 1.103 0.033 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_256 1128073 22.5 1.41 Cyanobacteria;Spirulina 1.176 0.982 X NA X X NA NA NA NA NA NA X NA NA X NA
bin_257 194932 0.0 0.00 Spirochaetes 0.328 0.031 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_26 3688401 97.2 4.22 Deltaproteobacteria;Desulfobacula 0.201 0.034 NA X NA NA NA NA NA NA X NA X X NA X NA
bin_261 54079 0.0 0.00 Bacteroidetes 0.072 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_262 629939 46.5 1.41 Tenericutes 0.091 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_28 4812335 98.6 1.41 Bacteroidetes 1.224 3.040 NA NA NA NA NA NA X NA NA NA X NA NA X NA
bin_3 4300737 62.0 1.41 Bacteroidetes 0.358 0.022 NA NA NA NA NA NA X NA NA NA X NA NA X NA
Bin_3_1 23570043 87.3 254.93 Unknown 0.309 20.589 X NA X X NA NA NA NA NA NA X NA NA X NA
Bin_3_3 19802335 90.1 236.62 Unknown 6.192 17.767 X NA X X NA NA NA NA NA NA X X NA X X
bin_33 3200533 98.6 2.82 Bacteroidetes 0.328 0.372 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_35 666513 0.0 0.00 Gammaproteobacteria;Thioploca 13.760 0.216 X NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_37 595635 0.0 0.00 Gammaproteobacteria 5.242 0.265 NA NA NA NA NA NA NA NA X NA NA NA NA NA NA
bin_38 1189669 0.0 0.00 Betaproteobacteria;Rhodoferax 2.359 0.049 X NA NA NA NA NA NA NA NA NA NA NA NA NA NA
Bin_4_1-contigs 4187395 90.1 90.14 Betaproteobacteria;Rhodoferax 7.217 1.558 NA NA NA NA X X NA NA X NA X X X X X
Bin_4_3_4-contigs 3046083 67.6 1.41 Betaproteobacteria;Sulfuritalea 0.215 0.649 X NA NA NA NA NA NA NA X NA X X X X NA
Bin_4_4-contigs 3519382 93.0 1.41 Betaproteobacteria;Hydrogenophaga 10.925 0.238 X NA NA NA NA NA NA NA X NA X NA X X X
bin_43 1290979 56.3 1.41 Chloroflexi;Anaerolinea 0.221 0.064 NA NA NA NA NA NA NA NA X NA X NA NA X NA
bin_44 2317582 45.1 0.00 Betaproteobacteria;Rhodoferax 1.299 0.143 X NA NA NA NA NA NA NA X NA X X X NA NA
bin_45 2731051 95.8 2.82 Gammaproteobacteria;Methylococcaceae 0.294 0.100 NA NA NA NA NA NA NA X X X X NA NA X X
bin_46 2729705 66.2 5.63 Betaproteobacteria;Rhodoferax 1.997 0.047 X NA NA NA NA NA NA NA NA NA X NA X NA NA
bin_47 3407323 53.5 1.41 Bacteria 0.190 0.021 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_49 2217859 95.8 0.00 Epsilonproteobacteria;Sulfuricurvum 1.370 0.121 NA NA NA NA NA NA NA X X NA X NA NA X NA
bin_5 2954443 77.5 0.00 Deltaproteobacteria 0.343 0.023 NA NA NA NA NA NA NA NA NA NA X NA X X X
bin_50 3858105 87.3 8.45 Bacteria 1.064 0.394 NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_51 1580267 0.0 0.00 Bacteria 0.547 0.162 NA NA NA NA NA NA NA NA NA NA X X NA NA NA
bin_54 571641 47.9 1.41 Bacteroidetes;Bernardetia 0.759 84.010 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_57 3922016 97.2 1.41 Bacteroidetes 0.231 2.995 NA NA NA NA NA NA X NA NA NA X X NA NA NA
bin_6 1947632 26.8 0.00 Deltaproteobacteria;Desulfomicrobium 1.243 1.378 NA NA NA NA NA NA NA NA X NA X X NA NA NA
Bin_6_3-contigs 2205377 98.6 1.41 Epsilonproteobacteria;Sulfurimonas 0.415 0.017 NA NA NA NA NA NA NA X X NA X NA NA NA NA
Bin_6_9-contigs 1997449 97.2 0.00 Epsilonproteobacteria;Arcobacter 6.999 0.107 NA NA NA NA NA NA NA X X NA X X NA NA NA
bin_61 1160311 21.1 0.00 Deltaproteobacteria;Desulfocapsa 1.409 0.067 NA NA NA NA NA NA NA X X NA NA X NA NA NA
bin_64 232602 0.0 0.00 Bacteria;Silvanigrellales 0.016 0.040 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_65 434310 0.0 0.00 Deltaproteobacteria;Bdellovibrio 0.067 NA NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_66 2006576 50.7 0.00 Verrucomicrobia 0.130 0.015 NA NA NA NA NA NA NA NA X NA X NA NA X NA
bin_67 665089 21.1 0.00 Epsilonproteobacteria 1.230 63.479 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_69 3315494 91.5 4.22 Bacteroidetes 0.691 0.043 NA NA NA NA NA NA X NA NA NA X NA NA NA NA
Bin_7_3-contigs 3971796 85.9 1.41 Bacteria 5.295 0.536 NA NA NA NA NA NA NA X NA NA X NA NA X NA
Bin_7_6-contigs 1954091 29.6 0.00 Betaproteobacteria;Methylibium 1.377 0.025 NA NA NA NA X X NA NA NA NA X NA NA NA NA
bin_70 2249573 70.4 0.00 Betaproteobacteria;Hydrogenophaga 4.677 0.109 X NA NA NA NA NA NA NA NA NA X NA X X NA
bin_72 1332738 45.1 0.00 Verrucomicrobia 0.421 0.046 NA NA NA NA NA NA NA NA X NA X X NA NA NA
bin_73 2387643 33.8 4.22 Gammaproteobacteria 1.639 0.095 NA NA NA NA NA NA NA NA X NA NA NA NA NA NA
bin_75 602309 46.5 0.00 Bacteroidetes;Paludibacter 2.128 0.063 NA NA NA NA NA NA NA X NA NA NA NA NA NA NA
bin_77 427799 0.0 0.00 Betaproteobacteria;Candidatus Accumulibacter 1.052 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_78 3197050 46.5 5.63 Gammaproteobacteria 1.011 0.041 NA NA NA NA NA NA X NA X NA NA NA NA X X
bin_79 575930 40.8 0.00 Unknown 0.045 2.679 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_8 4061672 63.4 1.41 Chloroflexi;Anaerolinea 0.340 0.015 NA NA NA NA NA NA NA NA X NA X NA NA X NA
bin_83 2395034 67.6 4.22 Deltaproteobacteria;Desulfobacteraceae 0.946 2.367 NA X NA NA NA NA NA NA X NA X X NA X NA
bin_85 574286 0.0 0.00 Deltaproteobacteria;Desulfocapsa 2.217 15.581 NA NA NA NA NA NA NA NA X NA NA NA NA X NA
bin_86 3921580 60.6 1.41 Firmicutes - Clostridia 0.263 0.032 NA NA NA NA NA NA NA NA NA NA NA X NA NA NA
bin_87 720606 42.3 0.00 Bacteroidetes 1.204 4.460 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_88 2317404 80.3 2.82 Bacteroidetes 0.356 0.036 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_89 3062395 70.4 2.82 Verrucomicrobia;Akkermansia 0.389 5.748 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_9 4643096 100.0 2.82 Bacteroidetes 0.761 0.036 NA NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_90 1629916 43.7 0.00 Deltaproteobacteria 0.792 0.034 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_91 3172373 80.3 0.00 Betaproteobacteria 1.995 0.056 X NA NA NA NA NA NA NA NA NA X NA NA X NA
bin_92 3783221 87.3 1.41 Bacteroidetes 0.401 0.043 NA NA NA NA NA NA NA NA NA NA NA NA NA X NA
bin_94 501389 0.0 0.00 Epsilonproteobacteria;Sulfurospirillum 1.069 0.074 NA NA NA NA NA NA NA NA NA NA X NA NA NA NA
bin_96 339985 0.0 0.00 Bacteroidetes;Flavobacterium 9.985 0.237 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA
bin_99 540621 0.0 0.00 Gammaproteobacteria 0.427 NA NA NA NA NA NA NA NA NA NA NA X NA NA X NA

Conclusion

Phormidium is an abundant and transcriptionally active member of the photosynthetic community. This cyanobacterial MAG is highly covered in the metagenome and metatranscriptomic samples (Supplemental Figure 1). Lots of metatranscriptomic reads mapped to Phormidium genes, notably those belonging to photosynthesis and autotrophy (Figure 2 and Figure 6). Variants of psbA optimized for different redox conditions are present in the Phormidium genome and differentially active (Figure 4).

I observed that Phormidium was transcribing sulfide quinone reductase (sqr) genes in day and night (Figure 4). There was higher relative expression of sqrII, the type putatively involved in sulfide detoxification, compared to sqrI, the type putatively involved in anoxygenic photosynthesis based on phylogeny. The expression patterns of sqrI are similar to those of photosystem I genes psaL and psaX (Supplemental Figure 5), suggesting that sqrI expression is coupled with operation of photosystem I (aka, evidence for anoxygenic photosynthesis using sulfide).

Planktothrix and Pseudanabaena are less abundant, maybe functionally distinct, cyanobacteria in the community. We have good Planktothrix and Pseudanabaena MAGs (Supplemental Table 2), and like Phormidium they have different versions of the psbA gene. Phormidium and Pseudanabaena have variants for no oxygen evolution (psbA2), which Planktothrix does not have. Yet we observed activity in the metatranscriptomic data of only the versions transcribed for low-oxygen (psbA3) or typical redox (psbA4) conditions (Figures 2 and 3). Further, neither of these cyanobacterial MAGs were actively transcribing any of their sqr genes (Figure 4) (or maybe Phormidium was swamping out the metatranscriptome).

Interestingly, Pseudanabaena has a type IV sqr gene that is uncommonly observed in cyanobacteria. It was first identified in Geitlerinema sp. PCC9228 isolated from a hypersaline lake that experiences high sulfide concentrations, but Geitlerinema uses its type I sqr for anoxygenic photosynthesis (Grim and Dick, 2016). Another cyanobacterium, Leptolyngbya sp. strain hensonii has only a type IV sqr for anoxygenic photosynthesis (Dick, Grim, and Klatt, 2018)(Hamilton et al., 2018).

Are Phormidium and sulfur oxidizing bacteria taking on the lion’s share of consuming/detoxifying sulfide? If so, that could potentially open geochemical space for the survival of other cyanobacteria (such as Planktothrix) that may be more sensitive to variable sulfide.

Bacillariophyte diatoms are abundant and elusive members of the mat. Take with a grain of salt, since my expertise is not in eukaryote genome reconstruction and exploration, I saw lots of reads and a good portion of the metagenome recruiting to two putative diatom MAGs (Supplemental Figure 3). Diatom photosynthesis is active in the mat (Figure 2 and Figure 6). However, unlike cyanobacteria, diatoms do not have variants of psbA for different oxygen/redox conditions. Given the sulfide concentrations in the mat, and potential for constant sulfide exposure from sulfate reducing bacteria, these diatoms are making it work.

Sulfur cyclers are influential members of the MIS mat. We have a handful of good-quality MAGs that are putative sulfate reducers, based on the presence of the dsrA gene (Figure 1, Figure 5, Supplemental Figure 7, and Supplemental Table 2). There is some activity of the Wood-Ljungdahl Pathway of autotrophy (Figure 6).

Sadly we did not get such great sulfur oxidizing bacterial MAGs (Figure 1 and Supplemental Table 2). Many of the rdsrA genes observed in the metatranscriptomic data, were on contigs that could not be binned (Figure 5).

And that’s it. Go read the mansucript if you want more!

References

  1. Grim and Dick, 2016
  2. Dick, Grim, and Klatt, 2018
  3. Hamilton et al., 2018
  4. Grim et al., 2021 this manuscript